RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 SHMT1P34896 483 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 PIGAP37287 484 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 PAFAH1B1P43034 410 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 FASLGP48023 281 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 METAP2P50579 478 aaKnown RBP eCLIP3.33□□□□□ -1.88
VRK1-202ENST00000553683 EIF3BP55884 814 aaKnown RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 DLX5P56178 289 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 GALNT2Q10471 571 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 GSTA3Q16772 222 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 UNQ6126/PRO20091Q6UXV3 157 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 CCNI2Q6ZMN8 369 aaPredicted RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 Q6ZTC4 211 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 TUBA1AQ71U36 451 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 ARMC8Q8IUR7 673 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 KCNH5Q8NCM2 988 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 IL17REQ8NFR9 667 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 LNX1Q8TBB1 728 aaPredicted RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 CREB3L4Q8TEY5 395 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 DNASE2BQ8WZ79 361 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 ERGIC1Q969X5 290 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 KLHL29Q96CT2 875 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 RNF125Q96EQ8 232 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 SAAL1Q96ER3 474 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 SLC41A2Q96JW4 573 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 BBS4Q96RK4 519 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 TUBA1CQ9BQE3 449 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 ESRP2Q9H6T0 727 aaKnown RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 JMJD4Q9H9V9 463 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 DDX4Q9NQI0 724 aaKnown RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 PLSCR4Q9NRQ2 329 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 SAGE1Q9NXZ1 904 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 GGA3Q9NZ52 723 aa3.33□□□□□ -1.88
VRK1-202ENST00000553683 FBXO9Q9UK97 447 aaPredicted RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 LSM4Q9Y4Z0 139 aaKnown RBP3.33□□□□□ -1.88
VRK1-202ENST00000553683 TULP2O00295 520 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 SEC14L5O43304 696 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 CLDN14O95500 239 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 SSTR2P30874 369 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 CDAP32320 146 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 HYAL1Q12794 435 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 GRIK3Q13003 919 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 PPP2R5BQ15173 497 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 SYT16Q17RD7 645 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 USP41Q3LFD5 358 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 ZNF718Q3SXZ3 478 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 ACCSLQ4AC99 568 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 C6orf141Q5SZD1 244 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 GGNBP1Q5YKI7 109 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 TRNP1Q6NT89 227 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 TAOK1Q7L7X3 1001 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 CHERPQ8IWX8 916 aaKnown RBP3.32□□□□□ -1.88
VRK1-202ENST00000553683 ST8SIA4Q92187 359 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 TANKQ92844 425 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 KLHL15Q96M94 604 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 NR1H4Q96RI1 486 aaPredicted RBP3.32□□□□□ -1.88
VRK1-202ENST00000553683 PKP4Q99569 1192 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 KXD1Q9BQD3 176 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 HAUS8Q9BT25 410 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 RETREG1Q9H6L5 497 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 EVA1AQ9H8M9 152 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 CNGB3Q9NQW8 809 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 ASAH2Q9NR71 780 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 SLC9A2Q9UBY0 812 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 SARDHQ9UL12 918 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 GTF2A1LQ9UNN4 478 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 ERVK-11Q9UQG0 969 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 VDAC3Q9Y277 283 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 SNX9Q9Y5X1 595 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 KDM3AQ9Y4C1 1321 aa3.32□□□□□ -1.88
VRK1-202ENST00000553683 TCF20Q9UGU0 1960 aaKnown RBP3.32□□□□□ -1.88
VRK1-202ENST00000553683 CGNL1Q0VF96 1302 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 PLEKHD1A6NEE1 506 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 LRRC53A6NM62 1247 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 BMPR1BO00238 502 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 BCAT2O15382 392 aaPredicted RBP3.31□□□□□ -1.88
VRK1-202ENST00000553683 TNFSF14O43557 240 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 BUB3O43684 328 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 CLCNKAP51800 687 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 EFNA5P52803 228 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 DDR1Q08345 913 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 SLC9B1Q4ZJI4 515 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 GORABQ5T7V8 394 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 INTS11Q5TA45 600 aaKnown RBP3.31□□□□□ -1.88
VRK1-202ENST00000553683 ANKRD54Q6NXT1 300 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 B3GNT6Q6ZMB0 384 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 SLC46A3Q7Z3Q1 461 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 NOXA1Q86UR1 476 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 DHX40Q8IX18 779 aaKnown RBP3.31□□□□□ -1.88
VRK1-202ENST00000553683 SLC35F3Q8IY50 421 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 DSELQ8IZU8 1212 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 ZBTB2Q8N680 514 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 ESX1Q8N693 406 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 HUS1BQ8NHY5 278 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 SORCS1Q8WY21 1168 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 FIG4Q92562 907 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 FEM1CQ96JP0 617 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 C3orf30Q96M34 536 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 IFIH1Q9BYX4 1025 aaKnown RBP3.31□□□□□ -1.88
VRK1-202ENST00000553683 C1RLQ9NZP8 487 aa3.31□□□□□ -1.88
VRK1-202ENST00000553683 RCOR1Q9UKL0 485 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms