RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 A0A1W2PQ67 120 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 TMEM202A6NGA9 273 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 TRAFD1O14545 582 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-218ENST00000548945 FERP16591 822 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 CD82P27701 267 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 RGRP47804 291 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 RENBPP51606 427 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 AP1S1P61966 158 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 OGDHQ02218 1023 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 UBXN1Q04323 297 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 TCEA2Q15560 299 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 CLPPQ16740 277 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-218ENST00000548945 SKOR2Q2VWA4 1001 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-218ENST00000548945 ERMARDQ5T6L9 678 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 KCTD16Q68DU8 428 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 RBM43Q6ZSC3 357 aaKnown RBP12.9□□□□□ -0.34
PTCH1-218ENST00000548945 KIAA1524Q8TCG1 905 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 CELF6Q96J87 481 aaKnown RBP12.9□□□□□ -0.34
PTCH1-218ENST00000548945 PSKH2Q96QS6 385 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 CMKLR1Q99788 373 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 CINPQ9BW66 212 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-218ENST00000548945 WDR26Q9H7D7 661 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 LMBRD1Q9NUN5 540 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 PARVAQ9NVD7 372 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 PISDQ9UG56 409 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 MYO6Q9UM54 1294 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 LOXL2Q9Y4K0 774 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 COL12A1Q99715 3063 aa12.9□□□□□ -0.34
PTCH1-218ENST00000548945 SDK2Q58EX2 2172 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-218ENST00000548945 A0A1W2PQC6 194 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 ZW10O43264 779 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 DAPK3O43293 454 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 PRKCGP05129 697 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 HGFP14210 728 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 GM2AP17900 193 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 HCAR3P49019 387 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 IL10RBQ08334 325 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 MAMLD1Q13495 774 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 ARHGEF7Q14155 803 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 TMCO4Q5TGY1 634 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 SPECC1LQ69YQ0 1117 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 PLEKHA7Q6IQ23 1121 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 PNCKQ6P2M8 343 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 RFX8Q6ZV50 586 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 NYAP1Q6ZVC0 841 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 USP53Q70EK8 1073 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 C17orf82Q86X59 251 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-218ENST00000548945 SLITRK4Q8IW52 837 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 ARHGAP12Q8IWW6 846 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 LZTR1Q8N653 840 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 FNIP1Q8TF40 1166 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 ZNF599Q96NL3 588 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 SYT11Q9BT88 431 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 TMEM168Q9H0V1 697 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 DHX35Q9H5Z1 703 aaKnown RBP12.89□□□□□ -0.35
PTCH1-218ENST00000548945 CLMPQ9H6B4 373 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 SP110Q9HB58 689 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 LRIT1Q9P2V4 623 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 SEPT3Q9UH03 358 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 RNF215Q9Y6U7 377 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 LRRK2Q5S007 2527 aa12.89□□□□□ -0.35
PTCH1-218ENST00000548945 PRSS38A1L453 326 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 HTRA2O43464 458 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 SOCS5O75159 536 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 RNF8O76064 485 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 MBD3O95983 291 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 SFTPCP11686 197 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 MYCLP1P12525 358 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 ATP1A3P13637 1013 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 CCNB1P14635 433 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 ERCC2P18074 760 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 PSMA2P25787 234 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 NFKBIAP25963 317 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 HSPA9P38646 679 aaKnown RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 MYL5Q02045 173 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 PEX6Q13608 980 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 NR1D2Q14995 579 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 ZNF438Q7Z4V0 828 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 IRF2BP2Q7Z5L9 587 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 PAF1Q8N7H5 531 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 Q8N9G6 341 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 GPBAR1Q8TDU6 330 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 COL26A1Q96A83 441 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 COQ10AQ96MF6 247 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 KCTD15Q96SI1 283 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 SNRNP25Q9BV90 132 aaKnown RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 LGR4Q9BXB1 951 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 DPEP2Q9H4A9 486 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 CYP4F12Q9HCS2 524 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 MRPL40Q9NQ50 206 aaKnown RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 GPATCH2LQ9NWQ4 482 aa12.88□□□□□ -0.35
PTCH1-218ENST00000548945 TRNAU1APQ9NX07 287 aaKnown RBP12.88□□□□□ -0.35
PTCH1-218ENST00000548945 TMEM191CA6NGB0 347 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 B4DGG1 531 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-218ENST00000548945 DFFAO00273 331 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 SLC28A2O43868 658 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 PRPSAP2O60256 369 aa12.87□□□□□ -0.35
PTCH1-218ENST00000548945 CPNE6O95741 557 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms