RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 C10orf142B7Z368 130 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 BCAT2O15382 392 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-213ENST00000546820 SPINT1O43278 529 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 LRP3O75074 770 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 HEXIM1O94992 359 aaKnown RBP13.8□□□□□ -0.2
PTCH1-213ENST00000546820 AGTP01019 485 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 FGF1P05230 155 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 ALPIP09923 528 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 C6P13671 934 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 HNRNPA2B1P22626 353 aaKnown RBP13.8□□□□□ -0.2
PTCH1-213ENST00000546820 AFF3P51826 1226 aaKnown RBP13.8□□□□□ -0.2
PTCH1-213ENST00000546820 SEMG2Q02383 582 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 ACOX1Q15067 660 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 PPP1R7Q15435 360 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 SIRPB2Q5JXA9 342 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 NAPEPLDQ6IQ20 393 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 CRTC1Q6UUV9 634 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 RANBP10Q6VN20 620 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 KLHDC8BQ8IXV7 354 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 RAVER1Q8IY67 606 aaKnown RBP13.8□□□□□ -0.2
PTCH1-213ENST00000546820 TAB3Q8N5C8 712 aaPredicted RBP13.8□□□□□ -0.2
PTCH1-213ENST00000546820 SLC25A41Q8N5S1 370 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 TBL1YQ9BQ87 522 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 FICDQ9BVA6 458 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 GPR63Q9BZJ6 419 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 TRABDQ9H4I3 376 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 AASDHPPTQ9NRN7 309 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 PCYOX1Q9UHG3 505 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 HS3ST3A1Q9Y663 406 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 TRPM6Q9BX84 2022 aa13.8□□□□□ -0.2
PTCH1-213ENST00000546820 MUC6Q6W4X9 2439 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 C1orf232A0A0U1RR37 186 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 AP3B1O00203 1094 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 FPGTO14772 594 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 WNT9AO14904 365 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 KHNYNO15037 678 aaKnown RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 FOXD2O60548 495 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 MAGEC1O60732 1142 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 AP2A1O95782 977 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 APRTP07741 180 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 ZSCAN5DPP0CG00 497 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 ADRA1AP35348 466 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 MPLP40238 635 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 BASP1P80723 227 aaKnown RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 RALGDSQ12967 914 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 GPS1Q13098 491 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 SEMA5AQ13591 1074 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 LRRC14Q15048 493 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 AGERQ15109 404 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 TRIP13Q15645 432 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 FAXCQ5TGI0 409 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 DENND2CQ68D51 928 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 KCTD11Q693B1 232 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 SYDE1Q6ZW31 735 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 KLHL7Q8IXQ5 586 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 GPR161Q8N6U8 529 aaKnown RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 PDCD7Q8N8D1 485 aaKnown RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 DENND6BQ8NEG7 585 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 SPATA4Q8NEY3 305 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 SLCO2A1Q92959 643 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 GORASP1Q9BQQ3 440 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 NUSAP1Q9BXS6 441 aaKnown RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 DDX47Q9H0S4 455 aaKnown RBP13.79□□□□□ -0.2
PTCH1-213ENST00000546820 EBF2Q9HAK2 575 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 ZFYVE1Q9HBF4 777 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 ARNT2Q9HBZ2 717 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 TM9SF3Q9HD45 589 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 RAD18Q9NS91 495 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 TMEM74BQ9NUR3 256 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 SDK1Q7Z5N4 2213 aa13.79□□□□□ -0.2
PTCH1-213ENST00000546820 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 RGSL1A5PLK6 1076 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 PDE2AO00408 941 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 TOR1BO14657 336 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 RECQL5O94762 991 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CLDN7O95471 211 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 ATXN1LP0C7T5 689 aaKnown RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 ZNF806P0C7X5 589 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CD38P28907 300 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 ADCY8P40145 1251 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 C21orf59P57076 290 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 SARNPP82979 210 aaKnown RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CDK16Q00536 496 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 DR1Q01658 176 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 PTSQ03393 145 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 OVGP1Q12889 678 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 SPARCL1Q14515 664 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CNGA3Q16281 694 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 WHAMMP3Q1A5X7 153 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 PEAR1Q5VY43 1037 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 LRRC66Q68CR7 880 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 SLC23A3Q6PIS1 610 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 PPP1R21Q6ZMI0 780 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 MAATS1Q7Z4T9 603 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 PRUNE1Q86TP1 453 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 IQCHQ86VS3 1027 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 DCP2Q8IU60 420 aaKnown RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 NRSN1Q8IZ57 195 aa13.78□□□□□ -0.2
PTCH1-213ENST00000546820 CBARPQ8N350 705 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-213ENST00000546820 ZCCHC9Q8N567 271 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms