RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 BTBD6Q96KE9 485 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 ANP32EQ9BTT0 268 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 DEF6Q9H4E7 631 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 WDR26Q9H7D7 661 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 NOD2Q9HC29 1040 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 PHPT1Q9NRX4 125 aaPredicted RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 THSD1Q9NS62 852 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 ETNK2Q9NVF9 386 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 PCDHB1Q9Y5F3 818 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 PCDHGC4Q9Y5F7 938 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 CACNA1GO43497 2377 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TRPM6Q9BX84 2022 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 ARID1BQ8NFD5 2236 aaPredicted RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 DOCK4Q8N1I0 1966 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 SSU72P8A0A1W2PR75 194 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 EIF4E1BA6NMX2 242 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 A8MX80 341 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 AKR1B10O60218 316 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 PROSCO94903 275 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 HEXIM1O94992 359 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 PGLSO95336 258 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 MPOP05164 745 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 MX2P20592 715 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 CA4P22748 312 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 IL4RP24394 825 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 TEAD1P28347 426 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 MLLT3P42568 568 aaPredicted RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 PCBP4P57723 403 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 ITKQ08881 620 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 PEX6Q13608 980 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 SLC18A3Q16572 532 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 IFI16Q16666 785 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 ZSCAN23Q3MJ62 389 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 PERM1Q5SV97 790 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 ZFYVE27Q5T4F4 411 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 SPECC1LQ69YQ0 1117 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 TAF8Q7Z7C8 310 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 PGBD5Q8N414 524 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 PLA2G15Q8NCC3 412 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 FUBP1Q96AE4 644 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 NUS1Q96E22 293 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 SCRN2Q96FV2 425 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 COQ10AQ96MF6 247 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 RBM15Q96T37 977 aaKnown RBP eCLIP9.38□□□□□ -0.91
YBX3-218ENST00000546298 LGMNQ99538 433 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 SEMA3CQ99985 751 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 CCDC3Q9BQI4 270 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 ZNF670Q9BS34 389 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 XPO4Q9C0E2 1151 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 POLR1EQ9GZS1 481 aaKnown RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 SYNDIG1Q9H7V2 258 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 NT5MQ9NPB1 228 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 AMACRQ9UHK6 382 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 MOSPD1Q9UJG1 213 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 DNPEPQ9ULA0 475 aa9.38□□□□□ -0.91
YBX3-218ENST00000546298 PNMA8BQ9ULN7 279 aaPredicted RBP9.38□□□□□ -0.91
YBX3-218ENST00000546298 TTC24A2A3L6 582 aaPredicted RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 TMEM202A6NGA9 273 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 MATN3O15232 486 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 ZW10O43264 779 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 PYGLP06737 847 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 CELA2BP08218 269 aaPredicted RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 MYCLP1P12525 358 aaPredicted RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 CCNCP24863 283 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 ITPKBP27987 946 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 MAN1A1P33908 653 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 GJC1P36383 396 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 GARSP41250 739 aaKnown RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 ARSEP51690 589 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 EPHB1P54762 984 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 UCNP55089 124 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 MAXP61244 160 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 CCDC173Q0VFZ6 552 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 GALNT2Q10471 571 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 ILF3Q12906 894 aaKnown RBP eCLIP9.37□□□□□ -0.91
YBX3-218ENST00000546298 TRAF2Q12933 501 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 MMRN1Q13201 1228 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 DPYSL3Q14195 570 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 PAFAH1B3Q15102 231 aaKnown RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 CNGA3Q16281 694 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 ANKRD20A8PQ5CZ79 823 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 BROXQ5VW32 411 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 DENND2CQ68D51 928 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 OGFOD3Q6PK18 319 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 IGF2-ASQ6U949 168 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 CRTC1Q6UUV9 634 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 ARL14Q8N4G2 192 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 TEX26Q8N6G2 289 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 KYQ8NBH2 561 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 FAM46DQ8NEK8 389 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 WDR36Q8NI36 951 aaKnown RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 KIAA1524Q8TCG1 905 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 OR1E3Q8WZA6 343 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 FATE1Q969F0 183 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 CCDC74AQ96AQ1 378 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 CCDC97Q96F63 343 aaPredicted RBP9.37□□□□□ -0.91
YBX3-218ENST00000546298 DTD2Q96FN9 168 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 PDXPQ96GD0 296 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 ATXN7L3BQ96GX2 97 aa9.37□□□□□ -0.91
YBX3-218ENST00000546298 NSMCE3Q96MG7 304 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms