RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 DNAJC16Q9Y2G8 782 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 NOSIPQ9Y314 301 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 TRAF6Q9Y4K3 522 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 A3GALT2U3KPV4 340 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 GREB1Q4ZG55 1949 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DENND4CQ5VZ89 1909 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ARHGEF35A5YM69 484 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ZNF487B1APH4 448 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 J3KRW8 73 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ZBTB39O15060 712 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RASGRP1O95267 797 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MYCP01106 439 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 CALB1P05937 261 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 S100A5P33763 92 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ETFBP38117 255 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TAS2R40P59535 323 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ABCE1P61221 599 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 WDR5P61964 334 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 CYP2A13Q16696 494 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 KYAT1Q16773 422 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 FASTKD1Q53R41 847 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 TCHHL1Q5QJ38 904 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 CES4AQ5XG92 561 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CDHR3Q6ZTQ4 885 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 VASH1Q7L8A9 365 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 ERMP1Q7Z2K6 904 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 LIMS2Q7Z4I7 341 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SPRED1Q7Z699 444 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SLC47A2Q86VL8 602 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 FAM178BQ8IXR5 827 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CMTR2Q8IYT2 770 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 DSELQ8IZU8 1212 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ESX1Q8N693 406 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 LSMEM1Q8N8F7 131 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 BTBD6Q96KE9 485 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RDH12Q96NR8 316 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DHRS9Q9BPW9 319 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 C9orf16Q9BUW7 83 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TRIM8Q9BZR9 551 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TMEM117Q9H0C3 514 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RAD21L1Q9H4I0 556 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 COPS7BQ9H9Q2 264 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 TMEM39AQ9NV64 488 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PAK1IP1Q9NWT1 392 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 GDAP2Q9NXN4 497 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PKD2L1Q9P0L9 805 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 GMIPQ9P107 970 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 EIF2B4Q9UI10 523 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 PCDHGB4Q9UN71 923 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PRELID1Q9Y255 219 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PCDHGB5Q9Y5G0 923 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PCDHA11Q9Y5I1 949 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RAD54BQ9Y620 910 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 HELZP42694 1942 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 CHD9Q3L8U1 2897 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 A0A0U1RQF3 1178 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TCRBV5S1A1TA0A578 114 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 C2orf71A6NGG8 1288 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 AQP12BA6NM10 295 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TMEM189-UBE2V1I3L0A0 370 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ACKR2O00590 384 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 GPR182O15218 404 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DYRK3O43781 588 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PLIN3O60664 434 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MRPS14O60783 128 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 ALDH1A2O94788 518 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CYP17A1P05093 508 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 APOA4P06727 396 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TRIM49P0CI25 452 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TRIM49CP0CI26 452 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MBL2P11226 248 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 UBL4AP11441 157 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PIK3R1P27986 724 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 GNG2P59768 71 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 IFITM2Q01629 132 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 TRIM25Q14258 630 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 ATP13A4Q4VNC1 1196 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CCNYL2Q5T2Q4 361 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 NDUFAF5Q5TEU4 345 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 OGFOD2Q6N063 350 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CAPN12Q6ZSI9 719 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 MAVSQ7Z434 540 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ADAMTSL2Q86TH1 951 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 SLC51BQ86UW2 128 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ANKMY2Q8IV38 441 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 AQP12AQ8IXF9 295 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DEPDC4Q8N2C3 294 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 LINC00469Q8N7U9 141 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 PHF10Q8WUB8 498 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 TRAPPC12Q8WVT3 735 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 CEP170P1Q96L14 293 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 DACH2Q96NX9 599 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RBM14Q96PK6 669 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 TRIM15Q9C019 465 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 COQ10BQ9H8M1 238 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 AGO3Q9H9G7 860 aaKnown RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 PRMT7Q9NVM4 692 aaPredicted RBP5.28□□□□□ -1.56
USP28-213ENST00000544967 PAK5Q9P286 719 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 ENPP5Q9UJA9 477 aa5.28□□□□□ -1.56
USP28-213ENST00000544967 RIMKLBQ9ULI2 386 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms