RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 DNAAF5Q86Y56 855 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 PELI3Q8N2H9 469 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 FAM26EQ8N5C1 309 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 RTL3Q8N8U3 475 aaKnown RBP12.88□□□□□ -0.35
USP28-212ENST00000544750 RXFP2Q8WXD0 754 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 NTAN1Q96AB6 310 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 EXOC2Q96KP1 924 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 CCDC74BQ96LY2 380 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 LGR4Q9BXB1 951 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 DPEP2Q9H4A9 486 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 ATP8A1Q9Y2Q0 1164 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 B3GALT1Q9Y5Z6 326 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 C2CD4BA6NLJ0 364 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 RASA4BC9J798 803 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CACNB4O00305 520 aaPredicted RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 RASA4O43374 803 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 RECQL5O94762 991 aaPredicted RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 FUCA1P04066 466 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 PRKCGP05129 697 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 FGF1P05230 155 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CCNB1P14635 433 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 XPAP23025 273 aaPredicted RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 STAT1P42224 750 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 PTPN9P43378 593 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CCR10P46092 362 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 MTIF2P46199 727 aaKnown RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 HDAC4P56524 1084 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 YBEYP58557 167 aaPredicted RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 TRA2AQ13595 282 aaKnown RBP eCLIP12.87□□□□□ -0.35
USP28-212ENST00000544750 GRM3Q14832 879 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 AMZ1Q400G9 498 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CDKAL1Q5VV42 579 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 TAF3Q5VWG9 929 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 BRAT1Q6PJG6 821 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 LIPIQ6XZB0 460 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CAMK1DQ8IU85 385 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CREBRFQ8IUR6 639 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 FAM114A1Q8IWE2 563 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 IL22RA1Q8N6P7 574 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 JOSD2Q8TAC2 188 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 ENOX1Q8TC92 643 aaKnown RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 KIAA1524Q8TCG1 905 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CPA5Q8WXQ8 436 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 SLC45A3Q96JT2 553 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 ZNF641Q96N77 438 aaPredicted RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 CATSPER2Q96P56 530 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 TUBGCP2Q9BSJ2 902 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 DDA1Q9BW61 102 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 NAA15Q9BXJ9 866 aaKnown RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 PDCL3Q9H2J4 239 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 PDFQ9HBH1 243 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 CYP4F12Q9HCS2 524 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 AKAP7Q9P0M2 348 aaPredicted RBP12.87□□□□□ -0.35
USP28-212ENST00000544750 ST14Q9Y5Y6 855 aa12.87□□□□□ -0.35
USP28-212ENST00000544750 ITPR2Q14571 2701 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 PRSS38A1L453 326 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ZNF891A8MT65 544 aaPredicted RBP12.86□□□□□ -0.35
USP28-212ENST00000544750 WASH4PA8MWX3 477 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 DUX1O43812 170 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 MMEP08473 750 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 THRAP10827 490 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 KELP23276 732 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ALDH4A1P30038 563 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 SDC4P31431 198 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 CD97P48960 835 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 STX1AQ16623 288 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 TCP11X2Q5H9J9 407 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 AFMIDQ63HM1 303 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ERAP2Q6P179 960 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 CACNA2D3Q8IZS8 1091 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 UMODL1-AS1Q8N2C9 162 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 PYROXD2Q8N2H3 581 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 BMPERQ8N8U9 685 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 OR4D9Q8NGE8 314 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 C9orf43Q8TAL5 461 aaPredicted RBP12.86□□□□□ -0.35
USP28-212ENST00000544750 EPS8L1Q8TE68 723 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ART4Q93070 314 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 MIB2Q96AX9 1013 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ECHDC3Q96DC8 303 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 HSD3B7Q9H2F3 369 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 NDST4Q9H3R1 872 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ANO10Q9NW15 660 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 PILRAQ9UKJ1 303 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 FHOD1Q9Y613 1164 aa12.86□□□□□ -0.35
USP28-212ENST00000544750 ZNF106Q9H2Y7 1883 aaKnown RBP12.86□□□□□ -0.35
USP28-212ENST00000544750 B4E171 279 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 PPM1DO15297 605 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 CAPN5O15484 640 aaPredicted RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 NKX2-8O15522 239 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 RAD1O60671 282 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 ECEL1O95672 775 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 CYP1A1P04798 512 aaPredicted RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 PRKCSHP14314 528 aaPredicted RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 MMP8P22894 467 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 EEF1GP26641 437 aaKnown RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 CSF2RBP32927 897 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 TSPAN7P41732 249 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 GPR3P46089 330 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 RGRP47804 291 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 CSNK1DP48730 415 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms