RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TAS2R38	P59533	333 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	RPS21	P63220	83 aa	Known RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MTM1	Q13496	603 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	POU6F1	Q14863	301 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CERCAM	Q5T4B2	595 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	SEL1L3	Q68CR1	1132 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	LRRC66	Q68CR7	880 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	KIAA0895L	Q68EN5	471 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	DENND5A	Q6IQ26	1287 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	NEK5	Q6P3R8	708 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CASC4	Q6P4E1	433 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	LRRC8B	Q6P9F7	803 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	PRR23B	Q6ZRT6	265 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	LPCAT2	Q7L5N7	544 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	LYSMD3	Q7Z3D4	306 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	GLT6D1	Q7Z4J2	308 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	TSPAN33	Q86UF1	283 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	C11orf74	Q86VG3	221 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	HOOK3	Q86VS8	718 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	HORMAD1	Q86X24	394 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	TMEFF1	Q8IYR6	380 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	NAT8L	Q8N9F0	302 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MCU	Q8NE86	351 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	GAB3	Q8WWW8	586 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	IFT81	Q8WYA0	676 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	SPOCK2	Q92563	424 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	KLK6	Q92876	244 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MCCC1	Q96RQ3	725 aa	Predicted RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	PRRX2	Q99811	253 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	TRABD	Q9H4I3	376 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	C6orf106	Q9H6K1	298 aa	Predicted RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZFYVE1	Q9HBF4	777 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	ARNT2	Q9HBZ2	717 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MAGEE1	Q9HCI5	957 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	XAB2	Q9HCS7	855 aa	Known RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CASS4	Q9NQ75	786 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	HACD3	Q9P035	362 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	WHRN	Q9P202	907 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MBD1	Q9UIS9	605 aa	Predicted RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	PPIL1	Q9Y3C6	166 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZNF711	Q9Y462	761 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	SPO11	Q9Y5K1	396 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CCDC78	A2IDD5	438 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	STX7	O15400	261 aa	Known RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	SLC31A1	O15431	190 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	HR	O43593	1189 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	BUD23	O43709	281 aa	Known RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	AVIL	O75366	819 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	TM7SF2	O76062	418 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	TMEM63A	O94886	807 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PAK4	O96013	591 aa	Predicted RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	C6	P13671	934 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZNF30	P17039	623 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	MGAT1	P26572	445 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	CNR2	P34972	360 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	DHPS	P49366	369 aa	Predicted RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	ARL4C	P56559	192 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PPP2CB	P62714	309 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PPP2CA	P67775	309 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	TUBB4B	P68371	445 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	CAV1	Q03135	178 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	RALGDS	Q12967	914 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	LAMB3	Q13751	1172 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	SIM2	Q14190	667 aa	Predicted RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	HLTF	Q14527	1009 aa	Known RBP eCLIP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	TRADD	Q15628	312 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	ELF2	Q15723	593 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	CNGA3	Q16281	694 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	BBS9	Q3SYG4	887 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	DNAJC21	Q5F1R6	531 aa	Known RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	KIAA1161	Q6NSJ0	714 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	HIBCH	Q6NVY1	386 aa	Predicted RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	LIPI	Q6XZB0	460 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	ARMCX6	Q7L4S7	300 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	IFT20	Q8IY31	132 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PDIK1L	Q8N165	341 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PPHLN1	Q8NEY8	458 aa	Known RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	BRSK1	Q8TDC3	778 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	UBXN4	Q92575	508 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	FOXJ1	Q92949	421 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	FAM131C	Q96AQ9	280 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	SERPINB12	Q96P63	405 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	LYSMD1	Q96S90	227 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	C1QTNF7	Q9BXJ2	289 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	FRMD8	Q9BZ67	464 aa	Predicted RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	BPIFA1	Q9NP55	256 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	FAM114A2	Q9NRY5	505 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PKD2L2	Q9NZM6	624 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	SAMD15	Q9P1V8	674 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	DMGDH	Q9UI17	866 aa	Known RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	FNDC3A	Q9Y2H6	1198 aa	Known RBP	10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	COQ6	Q9Y2Z9	468 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PKP3	Q9Y446	797 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	PCDHGA2	Q9Y5H1	932 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	MAD1L1	Q9Y6D9	718 aa		10.17	□□□□□ -0.78
CPSF7-221	ENST00000543545	CHD5	Q8TDI0	1954 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	SDR42E2	A6NKP2	422 aa		10.16	□□□□□ -0.78
CPSF7-221	ENST00000543545	METTL12	A8MUP2	240 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms