RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 SP110Q9HB58 689 aa12.05□□□□□ -0.48
CBX3P4-202ENST00000540428 LRIT1Q9P2V4 623 aa12.05□□□□□ -0.48
CBX3P4-202ENST00000540428 PISDQ9UG56 409 aa12.05□□□□□ -0.48
CBX3P4-202ENST00000540428 RNF215Q9Y6U7 377 aa12.05□□□□□ -0.48
CBX3P4-202ENST00000540428 A0A1W2PQC6 194 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 ZW10O43264 779 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 DAPK3O43293 454 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 SLC28A2O43868 658 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 PRKCGP05129 697 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 GM2AP17900 193 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 ERCC2P18074 760 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 PSMA2P25787 234 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 HCAR3P49019 387 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 UBXN1Q04323 297 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 MAMLD1Q13495 774 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 TGIF1Q15583 401 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 SPECC1LQ69YQ0 1117 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 PLEKHA7Q6IQ23 1121 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 PNCKQ6P2M8 343 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 C17orf82Q86X59 251 aaPredicted RBP12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 ARHGAP12Q8IWW6 846 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 LZTR1Q8N653 840 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 Q8N9G6 341 aaPredicted RBP12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 FNIP1Q8TF40 1166 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 COL26A1Q96A83 441 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 ZNF599Q96NL3 588 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 SNRNP25Q9BV90 132 aaKnown RBP12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 DPEP2Q9H4A9 486 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 DHX35Q9H5Z1 703 aaKnown RBP12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 MRPL40Q9NQ50 206 aaKnown RBP12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 PARVAQ9NVD7 372 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 GPATCH2LQ9NWQ4 482 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 SEPT3Q9UH03 358 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 MYO6Q9UM54 1294 aa12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 SETXQ7Z333 2677 aaKnown RBP12.04□□□□□ -0.48
CBX3P4-202ENST00000540428 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 PRSS38A1L453 326 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 B4DGG1 531 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 SOCS5O75159 536 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 RNF8O76064 485 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 CPNE6O95741 557 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 SFTPCP11686 197 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 MYCLP1P12525 358 aaPredicted RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 ATP1A3P13637 1013 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 CCNB1P14635 433 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 ITIH1P19827 911 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 NFKBIAP25963 317 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 HSPA9P38646 679 aaKnown RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 SCNN1BP51168 640 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 B4GALNT1Q00973 533 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 MYL5Q02045 173 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 KCNC4Q03721 635 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 NR1D2Q14995 579 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 CA9Q16790 459 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 KIF26BQ2KJY2 2108 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 LINC00303Q3SY05 128 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 MANEAQ5SRI9 462 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 TMCO4Q5TGY1 634 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 CLEC17AQ6ZS10 378 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 ZNF438Q7Z4V0 828 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 DTX1Q86Y01 620 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 PAF1Q8N7H5 531 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 EXD3Q8N9H8 876 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 GPBAR1Q8TDU6 330 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 COQ10AQ96MF6 247 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 KCTD15Q96SI1 283 aaPredicted RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 SYT11Q9BT88 431 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 LGR4Q9BXB1 951 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 GSDMCQ9BYG8 508 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 CYP4F12Q9HCS2 524 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 PHPT1Q9NRX4 125 aaPredicted RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 TRNAU1APQ9NX07 287 aaKnown RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 AKAP7Q9P0M2 348 aaPredicted RBP12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 B4GALT6Q9UBX8 382 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 PCDHB11Q9Y5F2 797 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 LRP4O75096 1905 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 AHCTF1Q8WYP5 2266 aa12.03□□□□□ -0.48
CBX3P4-202ENST00000540428 PRAMEF33A0A0G2JMD5 474 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 TMEM191CA6NGB0 347 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 DFFAO00273 331 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 HGSO14964 777 aaPredicted RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 HTRA2O43464 458 aaPredicted RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 PRPSAP2O60256 369 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 PRAMEF10O60809 474 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 WISP1O95388 367 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 TNFAIP3P21580 790 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 TEAD1P28347 426 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ETV5P41161 510 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ILF3Q12906 894 aaKnown RBP eCLIP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 PEX6Q13608 980 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 LBRQ14739 615 aaKnown RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ACOX1Q15067 660 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 MAP9Q49MG5 647 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 TMEM164Q5U3C3 297 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 APTXQ7Z2E3 356 aaKnown RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 IRF2BP2Q7Z5L9 587 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 PIM3Q86V86 326 aa12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 CBARPQ8N350 705 aaPredicted RBP12.02□□□□□ -0.49
CBX3P4-202ENST00000540428 ARFGAP1Q8N6T3 406 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms