RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 KIAA1143Q96AT1 154 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 DPYSL5Q9BPU6 564 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 EFHD1Q9BUP0 239 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 LGR4Q9BXB1 951 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 KLC2Q9H0B6 622 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 RAB6CQ9H0N0 254 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 NOL6Q9H6R4 1146 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 SIX2Q9NPC8 291 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 LHX3Q9UBR4 397 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 MOSPD1Q9UJG1 213 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 AJAP1Q9UKB5 411 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 PILRAQ9UKJ1 303 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 NEU3Q9UQ49 428 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 ATP8A1Q9Y2Q0 1164 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 ARHGEF17Q96PE2 2063 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 SPTBN1Q01082 2364 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 FAM170AA1A519 330 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 PRSS38A1L453 326 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 B4E171 279 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 MTSS1O43312 755 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 BUB1BO60566 1050 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 ECEL1O95672 775 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 PNMA6AP0CW24 399 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 PRKAR1AP10644 381 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 CYP11B1P15538 503 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 MAP4P27816 1152 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 TSPAN7P41732 249 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 YBEYP58557 167 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 RAB15P59190 212 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 CCDC14Q49A88 953 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 LACTB2Q53H82 288 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 CFAP58Q5T655 872 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 NKAIN2Q5VXU1 208 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 PNCKQ6P2M8 343 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 NRROSQ86YC3 692 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 EMC1Q8N766 993 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 MSANTD4Q8NCY6 345 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 EXOC2Q96KP1 924 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 TEFMQ96QE5 360 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 GSDMCQ9BYG8 508 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 SPRY4Q9C004 299 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 GPN2Q9H9Y4 310 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 OCIAD1Q9NX40 245 aa11.66□□□□□ -0.54
CLSTN3-209ENST00000539982 ANKRD36A6QL64 1941 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 PRR19A6NJB7 356 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 DUX1O43812 170 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 LSM8O95777 96 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 PRKCGP05129 697 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 THRAP10827 490 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 MPSTP25325 297 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 SDC4P31431 198 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 MC1RQ01726 317 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 CDC20Q12834 499 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 ILF3Q12906 894 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 BIRC2Q13490 618 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 SEPT6Q14141 434 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 CDO1Q16878 200 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 C15orf59Q2T9L4 293 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 DEFB109BQ30KR1 87 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 CRTC2Q53ET0 693 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 AFMIDQ63HM1 303 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 ANKS6Q68DC2 871 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 HIST2H2BCQ6DN03 193 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 TMEM71Q6P5X7 295 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 LIPIQ6XZB0 460 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 STRADAQ7RTN6 431 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 ZSWIM9Q86XI8 627 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 CAMK1DQ8IU85 385 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 NRSN1Q8IZ57 195 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 NLGN4XQ8N0W4 816 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 RTL3Q8N8U3 475 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 NLGN4YQ8NFZ3 816 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 RXFP2Q8WXD0 754 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 CPA5Q8WXQ8 436 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 TUBGCP5Q96RT8 1024 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 WDR26Q9H7D7 661 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 CARS2Q9HA77 564 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 METTL5Q9NRN9 209 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 TRNAU1APQ9NX07 287 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 TAAR2Q9P1P5 351 aa11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 PLEKHB1Q9UF11 243 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-209ENST00000539982 ICE1Q9Y2F5 2266 aa11.65□□□□□ -0.55
CLSTN3-209ENST00000539982 CREBBPQ92793 2442 aa11.65□□□□□ -0.55
CLSTN3-209ENST00000539982 IGHV1OR21-1A0A087WYE8 117 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 LOC101059948A0A1B0GTJ6 334 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 ENO4A6NNW6 628 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 EFCAB7A8K855 629 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 RASA4BC9J798 803 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 BIN1O00499 593 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 PPM1DO15297 605 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 TEX33O43247 280 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 RASA4O43374 803 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 FUCA1P04066 466 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 CEACAM5P06731 702 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 ELFN1P0C7U0 828 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 EPHB2P29323 1055 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 OAS2P29728 719 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 CSNK1DP48730 415 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 RALGDSQ12967 914 aa11.64□□□□□ -0.55
CLSTN3-209ENST00000539982 PEX6Q13608 980 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms