RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 HLA-DQB2P05538 268 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 IMPDH2P12268 514 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 TPP2P29144 1249 aaPredicted RBP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 CLCN2P51788 898 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 AFF1P51825 1210 aaKnown RBP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 TMEM207Q6UWW9 146 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 TOP1MTQ969P6 601 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 PLEKHG4BQ96PX9 1271 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 GLOD4Q9HC38 313 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 MRPL40Q9NQ50 206 aaKnown RBP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 SQORQ9Y6N5 450 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 A0A087X1B8 175 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 A0A0J9YYE9 177 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 A0A1W2PPW3 197 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 SIX3O95343 332 aaPredicted RBP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 STAMBPO95630 424 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 SLC4A1P02730 911 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 MMP3P08254 477 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 CXCR3P49682 368 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 FOXA1P55317 472 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 NAA20P61599 178 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 GRB7Q14451 532 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 TMEM26Q6ZUK4 368 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 LARP4Q71RC2 724 aaKnown RBP eCLIP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 CMTR2Q8IYT2 770 aaKnown RBP20.35■□□□□ 0.85
TMEM260-203ENST00000539559 ATPAF2Q8N5M1 289 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 HM13Q8TCT9 377 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 KCNA7Q96RP8 456 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 AKTIPQ9H8T0 292 aa20.35■□□□□ 0.85
TMEM260-203ENST00000539559 BMP2P12643 396 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 NCK1P16333 377 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 CAPN3P20807 821 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 ESRRGP62508 458 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 GEN1Q17RS7 908 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 C8orf82Q6P1X6 216 aaPredicted RBP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 OR52K2Q8NGK3 314 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 GIPC3Q8TF64 312 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 NUDT5Q9UKK9 219 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 AAR2Q9Y312 384 aaKnown RBP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 DHRS12A0PJE2 317 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 FAM155AB1AL88 458 aaPredicted RBP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 GIPC1O14908 333 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 WARSP23381 471 aaKnown RBP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 HCAR3P49019 387 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 CCR3P51677 355 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 TUBA4AP68366 448 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 MERTKQ12866 999 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 PLCL1Q15111 1095 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 FGD3Q5JSP0 725 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 FAM45BPQ6NSW5 357 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 LYSMD3Q7Z3D4 306 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 ARHGAP12Q8IWW6 846 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 FAM45AQ8TCE6 357 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 DNAJB3Q8WWF6 145 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 BIRC8Q96P09 236 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 SLC39A8Q9C0K1 460 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 PAIP1Q9H074 479 aaKnown RBP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 PIF1Q9H611 641 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 TMEM165Q9HC07 324 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 EML4Q9HC35 981 aaKnown RBP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 TREX1Q9NSU2 369 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 RBM22Q9NW64 420 aaKnown RBP eCLIP20.34■□□□□ 0.85
TMEM260-203ENST00000539559 DOLKQ9UPQ8 538 aa20.34■□□□□ 0.85
TMEM260-203ENST00000539559 A0A087WXM4 84 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 LTA4HP09960 611 aaKnown RBP20.33■□□□□ 0.85
TMEM260-203ENST00000539559 HOXD8P13378 290 aaPredicted RBP20.33■□□□□ 0.85
TMEM260-203ENST00000539559 GPX3P22352 226 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 CDKN2DP55273 166 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 POU4F1Q01851 419 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 KCTD21Q4G0X4 260 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 LZICQ8WZA0 190 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 C19orf60Q96EN9 201 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 NPLQ9BXD5 320 aaPredicted RBP20.33■□□□□ 0.85
TMEM260-203ENST00000539559 CXorf21Q9HAI6 301 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 PLGRKTQ9HBL7 147 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 RAD54BQ9Y620 910 aa20.33■□□□□ 0.85
TMEM260-203ENST00000539559 EI24O14681 340 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 HSPA8P11142 646 aaKnown RBP20.33■□□□□ 0.84
TMEM260-203ENST00000539559 BDNFP23560 247 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 MAXP61244 160 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 NEDD8Q15843 81 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 ZBED5Q49AG3 693 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 AGAP9Q5VTM2 703 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 BHLHA9Q7RTU4 235 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 LIMS2Q7Z4I7 341 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 RBM12BQ8IXT5 1001 aaKnown RBP20.33■□□□□ 0.84
TMEM260-203ENST00000539559 SLC15A3Q8IY34 581 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 SMYD1Q8NB12 490 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 STON2Q8WXE9 905 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 MRGPRX2Q96LB1 330 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 CCM2LQ9NUG4 571 aaPredicted RBP20.33■□□□□ 0.84
TMEM260-203ENST00000539559 CMTM6Q9NX76 183 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 USP22Q9UPT9 525 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 BTRCQ9Y297 605 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 CRYL1Q9Y2S2 319 aa20.33■□□□□ 0.84
TMEM260-203ENST00000539559 DARSP14868 501 aaKnown RBP20.32■□□□□ 0.84
TMEM260-203ENST00000539559 ZNF157P51786 506 aaPredicted RBP20.32■□□□□ 0.84
TMEM260-203ENST00000539559 STX1BP61266 288 aa20.32■□□□□ 0.84
TMEM260-203ENST00000539559 SH3BP2P78314 561 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms