RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	ZNF425	Q6IV72	752 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	GUSBP11	Q6P575	273 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CASC1	Q6TDU7	716 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CWC27	Q6UX04	472 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	ALKAL1	Q6UXT8	129 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	SYNE3	Q6ZMZ3	975 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	TPGS1	Q6ZTW0	290 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	TMTC3	Q6ZXV5	915 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	BRAP	Q7Z569	592 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	MTDH	Q86UE4	582 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	LRRTM3	Q86VH5	581 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	C4orf19	Q8IY42	314 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CCDC13	Q8IYE1	715 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	KIAA1958	Q8N8K9	716 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	OR5AN1	Q8NGI8	311 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CRYGN	Q8WXF5	182 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	USP7	Q93009	1102 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	OTUB2	Q96DC9	234 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	SENP8	Q96LD8	212 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	DCLRE1C	Q96SD1	692 aa	Known RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	ORAI3	Q9BRQ5	295 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	CIPC	Q9C0C6	399 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	NACA2	Q9H009	215 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	ZSWIM4	Q9H7M6	989 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	BARHL2	Q9NY43	387 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	WDR35	Q9P2L0	1181 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	WRAP73	Q9P2S5	460 aa	Predicted RBP	4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	LOXL2	Q9Y4K0	774 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	PCDHGB6	Q9Y5F9	930 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	MYLK	Q15746	1914 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	PLXND1	Q9Y4D7	1925 aa		4.1	□□□□□ -1.75
YBX3-205	ENST00000536107	STAB1	Q9NY15	2570 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	CEP192	Q8TEP8	1941 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107		A0A1W2PR77	199 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	TARSL2	A2RTX5	802 aa	Known RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	STMND1	H3BQB6	276 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	hCG_1984214	I3L0E3	225 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107		K7EM74	188 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	SCD	O00767	359 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	PRPF3	O43395	683 aa	Known RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	ANP32C	O43423	234 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	GRID2	O43424	1007 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	JAK2	O60674	1132 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NCR1	O76036	304 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NDUFA10	O95299	355 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	LIF	P15018	202 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	CAPN3	P20807	821 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	VAMP1	P23763	118 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	PRKCH	P24723	683 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	CD82	P27701	267 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	HARS2	P49590	506 aa	Known RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	GALC	P54803	685 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	GUCY1B3	Q02153	619 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	STAT4	Q14765	748 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	SAFB	Q15424	915 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	BMT2	Q1RMZ1	405 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	TM4SF20	Q53R12	229 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	ZRANB3	Q5FWF4	1079 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	XKR4	Q5GH76	650 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NCAPH2	Q6IBW4	605 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NCEH1	Q6PIU2	408 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	CRELD2	Q6UXH1	353 aa	Predicted RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	MICU3	Q86XE3	530 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	SPATS2	Q86XZ4	545 aa	Known RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	BBS7	Q8IWZ6	715 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	ZNF713	Q8N859	430 aa	Predicted RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	OR52N2	Q8NGI0	321 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NCOA7	Q8NI08	942 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	CCDC12	Q8WUD4	166 aa	Predicted RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	DYDC2	Q96IM9	177 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	FOXB1	Q99853	325 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	CHMP4B	Q9H444	224 aa	Known RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	SLAMF7	Q9NQ25	335 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	DIAPH3	Q9NSV4	1193 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	GJB4	Q9NTQ9	266 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	FBXL12	Q9NXK8	326 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NLGN3	Q9NZ94	848 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	RGL1	Q9NZL6	768 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	NCKIPSD	Q9NZQ3	722 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	FOXJ2	Q9P0K8	574 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	THAP10	Q9P2Z0	257 aa	Predicted RBP	4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	COPG2	Q9UBF2	871 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	DAAM1	Q9Y4D1	1078 aa		4.09	□□□□□ -1.75
YBX3-205	ENST00000536107	ZNF840P	A6NDX5	716 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CYB561D2	O14569	222 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	LRRTM2	O43300	516 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	XPOT	O43592	962 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	RNASEH2A	O75792	299 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	NEBL	O76041	1014 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	BPI	P17213	487 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ITIH1	P19827	911 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ITGA3	P26006	1051 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ANXA13	P27216	316 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	GNA11	P29992	359 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	SSTR2	P30874	369 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	APOBEC3A	P31941	199 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	MATR3	P43243	847 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	KIR2DL3	P43628	341 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	GUCY2F	P51841	1108 aa		4.08	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms