RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LRCH4O75427 683 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 RNF8O76064 485 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 ZIC2O95409 532 aaPredicted RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 PNLIPP16233 465 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 GLB1P16278 677 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 KELP23276 732 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 MIPP30301 263 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 SLC5A2P31639 672 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 UGT1A5P35504 534 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 HCAR3P49019 387 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 SCNN1BP51168 640 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 RENBPP51606 427 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 ZFP36L1Q07352 338 aaKnown RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 DPYSQ14117 519 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 PPP6R3Q5H9R7 873 aaPredicted RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 CCDC81Q6ZN84 652 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 CCNJLQ8IV13 435 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 FBXO39Q8N4B4 442 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 NSMCE3Q96MG7 304 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 ZNF599Q96NL3 588 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 LGR4Q9BXB1 951 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 TRIM7Q9C029 511 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 SEMA4CQ9C0C4 833 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 NAT10Q9H0A0 1025 aaKnown RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 WDR26Q9H7D7 661 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 EPB41L5Q9HCM4 733 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 MRPL40Q9NQ50 206 aaKnown RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 CWC15Q9P013 229 aaKnown RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 SEPT3Q9UH03 358 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 ATXN7L1Q9ULK2 861 aaPredicted RBP11.39□□□□□ -0.59
VPS28-214ENST00000531032 TENM4Q6N022 2769 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 LRRC53A6NM62 1247 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 TEX33O43247 280 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 HTRA2O43464 458 aaPredicted RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 FTLP02792 175 aaPredicted RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 GZMAP12544 262 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 TYRO3Q06418 890 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 SLC10A7Q0GE19 358 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 LY6DQ14210 128 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 HLTFQ14527 1009 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS28-214ENST00000531032 LBRQ14739 615 aaKnown RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 ZSCAN23Q3MJ62 389 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 C14orf28Q4W4Y0 310 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 TMCO4Q5TGY1 634 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 KIAA1614Q5VZ46 1190 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 PNCKQ6P2M8 343 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 ZNF571Q7Z3V5 609 aaPredicted RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 SPRED1Q7Z699 444 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 TAF8Q7Z7C8 310 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 TP53INP2Q8IXH6 220 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 PELI3Q8N2H9 469 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 LZTR1Q8N653 840 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 AOPEPQ8N6M6 819 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 FAM46DQ8NEK8 389 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 TMEM159Q96B96 161 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 COQ10AQ96MF6 247 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 CCNL2Q96S94 520 aaPredicted RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 TMEM168Q9H0V1 697 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 HAUS4Q9H6D7 363 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 ZWILCHQ9H900 591 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 RTN4Q9NQC3 1192 aaKnown RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 AIPL1Q9NZN9 384 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 B4GALT6Q9UBX8 382 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 AHCTF1Q8WYP5 2266 aa11.38□□□□□ -0.59
VPS28-214ENST00000531032 FLNBO75369 2602 aaKnown RBP11.38□□□□□ -0.59
VPS28-214ENST00000531032 UNC13CQ8NB66 2214 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 A0A1W2PQ67 120 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 PRSS38A1L453 326 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 B4DGG1 531 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 PDE2AO00408 941 aaPredicted RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 DDX3XO00571 662 aaKnown RBP eCLIP11.37□□□□□ -0.596e-7■■□□□ 12.4
VPS28-214ENST00000531032 NVLO15381 856 aaKnown RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 EFSO43281 561 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 NUDT21O43809 227 aaKnown RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 SOCS5O75159 536 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 PEX11BO96011 259 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 MYCLP1P12525 358 aaPredicted RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 HGFP14210 728 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 CR2P20023 1033 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 PCK1P35558 622 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 HSPA9P38646 679 aaKnown RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 PRKCIP41743 596 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 CNGA3Q16281 694 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 ASIC2Q16515 512 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 DPYSL2Q16555 572 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 TSR1Q2NL82 804 aaKnown RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 E4F1Q66K89 784 aaPredicted RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 SPECC1LQ69YQ0 1117 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 CAVIN1Q6NZI2 390 aaKnown RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 SFTPA2Q8IWL1 248 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 PGBD5Q8N414 524 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 PAF1Q8N7H5 531 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 Q8N9G6 341 aaPredicted RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 CCL4L1Q8NHW4 92 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 KIAA1524Q8TCG1 905 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 NUS1Q96E22 293 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 MED8Q96G25 268 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 MGME1Q9BQP7 344 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms