RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TMEM245Q9H330 911 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 TBC1D17Q9HA65 648 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 NT5MQ9NPB1 228 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 HEBP1Q9NRV9 189 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 SEPT10Q9P0V9 454 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 THAP10Q9P2Z0 257 aaPredicted RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 SLCO3A1Q9UIG8 710 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ANAPC5Q9UJX4 755 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 SIT1Q9Y3P8 196 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 PIAS3Q9Y6X2 628 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ANKRD36A6QL64 1941 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 WDR87Q6ZQQ6 2873 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 LOC100289279A0A1B0GTE1 492 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 A0A1W2PQ67 120 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 C1QTNF9BB2RNN3 333 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 WASH3PC4AMC7 463 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 DNALI1O14645 258 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 INSIG1O15503 277 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 SMAD6O43541 496 aaKnown RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 TMCC1O94876 653 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 SUN1O94901 812 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 SEC31AO94979 1220 aaKnown RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 GSRP00390 522 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 SERPINF2P08697 491 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 RHOXF2BP0C7M4 288 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MLNP12872 115 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 TPSB2P20231 275 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 TNFRSF8P28908 595 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 KIR2DL1P43626 348 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 RPL21P46778 160 aaKnown RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 SCNN1BP51168 640 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 GEMP55040 296 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 STARD6P59095 220 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 RHOAP61586 193 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 GUCY2DQ02846 1103 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 RAD51Q06609 339 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ITKQ08881 620 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MPP3Q13368 585 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ZNF235Q14590 738 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MORF4L2Q15014 288 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 TRIP13Q15645 432 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 TPSAB1Q15661 275 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MLF2Q15773 248 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 MYLK3Q32MK0 819 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ACCSLQ4AC99 568 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 HSF5Q4G112 596 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 TEX35Q5T0J7 233 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ARMC3Q5W041 872 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 KCTD11Q693B1 232 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 SDE2Q6IQ49 451 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 HIBCHQ6NVY1 386 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 NCEH1Q6PIU2 408 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 LINGO4Q6UY18 593 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 RANBP10Q6VN20 620 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ZNF852Q6ZMS4 543 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 SRLQ86TD4 932 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 LINC00523Q86TU6 105 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 PRPF39Q86UA1 669 aaKnown RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 PPIL6Q8IXY8 311 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 PGBD5Q8N414 524 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 DTWD2Q8NBA8 298 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 LRRN4CLQ8ND94 238 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MCUQ8NE86 351 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 OR2AP1Q8NGE2 309 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ARRDC2Q8TBH0 407 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 UBASH3BQ8TF42 649 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 FRS2Q8WU20 508 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 FAM3CQ92520 227 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 PTPRN2Q92932 1015 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ART4Q93070 314 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 TUBGCP5Q96RT8 1024 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MGME1Q9BQP7 344 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 RHOXF2Q9BQY4 288 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 CINPQ9BW66 212 aaPredicted RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 GBA3Q9H227 469 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ANKZF1Q9H8Y5 726 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ARNT2Q9HBZ2 717 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 EIF2B3Q9NR50 452 aaKnown RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 ASIC3Q9UHC3 531 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 FAM153AQ9UHL3 310 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 RSPH14Q9UHP6 348 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 MRPS17Q9Y2R5 130 aaKnown RBP7.47□□□□□ -1.21
CD44-228ENST00000528455 SNX24Q9Y343 169 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 USP34Q70CQ2 3546 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 VPS13AQ96RL7 3174 aa7.47□□□□□ -1.21
CD44-228ENST00000528455 ZFHX2Q9C0A1 2572 aaPredicted RBP7.46□□□□□ -1.21
CD44-228ENST00000528455 LOC285095A0A1B0GVY8 99 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 KANSL1LA0AUZ9 987 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 MAGEB16A2A368 324 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 SHISA7A6NL88 538 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 E7EVH7 732 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 K7ERQ8 282 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 MUSKO15146 869 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 TP73O15350 636 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 AP2A1O95782 977 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 DLGAP3O95886 979 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 HLA-DQB2P05538 268 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 APRTP07741 180 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 MMP2P08253 660 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms