RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PRAMEF12O95522 483 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 PENKP01210 267 aaPredicted RBP20.75■□□□□ 0.91
VPS28-209ENST00000528142 OGNP20774 298 aaKnown RBP20.75■□□□□ 0.91
VPS28-209ENST00000528142 ARRB2P32121 409 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 CSNK1DP48730 415 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 SLC12A2P55011 1212 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 ILF2Q12905 390 aaKnown RBP20.75■□□□□ 0.91
VPS28-209ENST00000528142 ZYG11AQ6WRX3 759 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 TMEM25Q86YD3 366 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 FSTL5Q8N475 847 aaPredicted RBP20.75■□□□□ 0.91
VPS28-209ENST00000528142 SORT1Q99523 831 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 TM6SF2Q9BZW4 377 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 CATSPERZQ9NTU4 200 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 KCNK4Q9NYG8 393 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 CPSF2Q9P2I0 782 aaKnown RBP20.75■□□□□ 0.91
VPS28-209ENST00000528142 CAPN7Q9Y6W3 813 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 TK2O00142 265 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 PER2O15055 1255 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZNF821O75541 412 aaPredicted RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 WISP3O95389 354 aaPredicted RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 MYL2P10916 166 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 LPOP22079 712 aaPredicted RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 HLA-FP30511 346 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ABL2P42684 1182 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 SLC20A2Q08357 652 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 TYSND1Q2T9J0 566 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 PDE12Q6L8Q7 609 aaKnown RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 LRRC8EQ6NSJ5 796 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 C10orf67Q8IYJ2 551 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 TTC30BQ8N4P2 665 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 PDCD6IPQ8WUM4 868 aaKnown RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZNF707Q96C28 371 aaPredicted RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 TSPAN17Q96FV3 270 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 IGSF5Q9NSI5 407 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 OXSMQ9NWU1 459 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZDHHC7Q9NXF8 308 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 TRIM13O60858 407 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 POU2F2P09086 479 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 GLRBP48167 497 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ABCE1P61221 599 aaKnown RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 PTPRRQ15256 657 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZNF77Q15935 545 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 TSNAXIP1Q2TAA8 658 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 PITRM1Q5JRX3 1037 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 SPDYAQ5MJ70 313 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZNF697Q5TEC3 545 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZNF549Q6P9A3 640 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 GRASPQ7Z6J2 395 aaPredicted RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 METTL3Q86U44 580 aaKnown RBP20.74■□□□□ 0.91
VPS28-209ENST00000528142 SPATA6LQ8N4H0 392 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 PIH1D2Q8WWB5 315 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 ZSWIM3Q96MP5 696 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 HEY2Q9UBP5 337 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 PCDHB9Q9Y5E1 797 aa20.74■□□□□ 0.91
VPS28-209ENST00000528142 TRAFD1O14545 582 aaPredicted RBP20.73■□□□□ 0.91
VPS28-209ENST00000528142 PGLSO95336 258 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 STC1P52823 247 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 CDKN2DP55273 166 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 NCALDP61601 193 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 ASTLQ6HA08 431 aaPredicted RBP20.73■□□□□ 0.91
VPS28-209ENST00000528142 AFTPHQ6ULP2 937 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 NAPRTQ6XQN6 538 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 CCDC91Q7Z6B0 441 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 MTDHQ86UE4 582 aaKnown RBP20.73■□□□□ 0.91
VPS28-209ENST00000528142 CAMK1DQ8IU85 385 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 HEXDCQ8WVB3 486 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 HACD3Q9P035 362 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 MARCOQ9UEW3 520 aaPredicted RBP20.73■□□□□ 0.91
VPS28-209ENST00000528142 CORO1CQ9ULV4 474 aaPredicted RBP20.73■□□□□ 0.91
VPS28-209ENST00000528142 HCFC2Q9Y5Z7 792 aa20.73■□□□□ 0.91
VPS28-209ENST00000528142 DOCK6Q96HP0 2047 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 HTRA2O43464 458 aaPredicted RBP20.72■□□□□ 0.91
VPS28-209ENST00000528142 TCF3P15923 654 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 CTSOP43234 321 aaPredicted RBP20.72■□□□□ 0.91
VPS28-209ENST00000528142 USP4Q13107 963 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 DGKKQ5KSL6 1271 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 ARMC12Q5T9G4 340 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 SDCCAG8Q86SQ7 713 aaPredicted RBP20.72■□□□□ 0.91
VPS28-209ENST00000528142 MICALL1Q8N3F8 863 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 PIWIL2Q8TC59 973 aaKnown RBP20.72■□□□□ 0.91
VPS28-209ENST00000528142 SCG3Q8WXD2 468 aaKnown RBP20.72■□□□□ 0.91
VPS28-209ENST00000528142 SKA1Q96BD8 255 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 SCYL1Q96KG9 808 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 UBXN10Q96LJ8 280 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 PBX4Q9BYU1 374 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 LINC00597Q9H2U6 94 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 ECT2Q9H8V3 914 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 CERS4Q9HA82 394 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 XPR1Q9UBH6 696 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 EVLQ9UI08 416 aaPredicted RBP20.72■□□□□ 0.91
VPS28-209ENST00000528142 DNAJC16Q9Y2G8 782 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 CRYL1Q9Y2S2 319 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 CDH23Q9H251 3354 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 ATG2AQ2TAZ0 1938 aa20.72■□□□□ 0.91
VPS28-209ENST00000528142 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.71■□□□□ 0.91
VPS28-209ENST00000528142 H2AFYO75367 372 aaKnown RBP20.71■□□□□ 0.91
VPS28-209ENST00000528142 PRSS56P0CW18 603 aa20.71■□□□□ 0.91
VPS28-209ENST00000528142 KITP10721 976 aa20.71■□□□□ 0.91
VPS28-209ENST00000528142 MAPK8P45983 427 aa20.71■□□□□ 0.91
VPS28-209ENST00000528142 GRIA4P48058 902 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms