RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PDE11AQ9HCR9 933 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FZD3Q9NPG1 666 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FANCFQ9NPI8 374 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEMA4BQ9NPR2 832 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLAMF7Q9NQ25 335 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRPV5Q9NQA5 729 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIH1D3Q9NQM4 214 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MBNL1Q9NR56 388 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAPOLBQ9NRJ5 636 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHB16Q9NRJ7 776 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCB8Q9NUT2 735 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATAD3AQ9NVI7 634 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM28Q9NW13 759 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBXO34Q9NWN3 711 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRNAU1APQ9NX07 287 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYBUQ9NX95 663 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGEF38Q9NXL2 777 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ING3Q9NXR8 418 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALKBH4Q9NXW9 302 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AATFQ9NY61 560 aaKnown RBP eCLIP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXC10Q9NYD6 342 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSD3Q9NYI0 1048 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ELOVL5Q9NYP7 299 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NINJ2Q9NZG7 142 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 COQ3Q9NZJ6 369 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OGFRQ9NZT2 677 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPP6Q9NZW5 540 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 JKAMPQ9P055 326 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AKAP7Q9P0M2 348 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH3BP4Q9P0V3 963 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HMG20BQ9P0W2 317 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF624Q9P2J8 865 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CGNQ9P2M7 1197 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNMT3BQ9UBC3 853 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 XPR1Q9UBH6 696 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARPP21Q9UBL0 812 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJB9Q9UBS3 223 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIMA1Q9UHB6 759 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL17BQ9UHF5 180 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPYL4Q9UJ04 414 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD207Q9UJ71 328 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LAMP5Q9UJQ1 280 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANAPC2Q9UJX6 822 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCND3Q9UK17 655 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBXL5Q9UKA1 691 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AJAP1Q9UKB5 411 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SARDHQ9UL12 918 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDH7Q9ULB5 785 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ICAM5Q9UMF0 924 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC8A2Q9UPR5 921 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP22Q9UPT9 525 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AURKCQ9UQB9 309 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTMR6Q9Y217 621 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRAF3IP3Q9Y228 551 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIN4Q9Y237 131 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HPSEQ9Y251 543 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHKBQ9Y259 395 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR37Q9Y2I8 494 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPH3AQ9Y2J0 694 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB1Q9Y2K1 713 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAB39Q9Y376 341 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMED5Q9Y3A6 229 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL11Q9Y3B7 192 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHST2Q9Y4C5 530 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM17Q9Y577 477 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLDN16Q9Y5I7 305 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRPV2Q9Y5S1 764 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACTL7AQ9Y615 435 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAD54BQ9Y620 910 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 POMT1Q9Y6A1 747 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX49Q9Y6V7 483 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEC23IPQ9Y6Y8 1000 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCSK5Q92824 1860 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 UTYO14607 1347 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP8B3O60423 1300 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MROH5Q6ZUA9 1318 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR17Q8IZU2 1322 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IGSF1Q8N6C5 1336 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KDRP35968 1356 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATRNL1Q5VV63 1379 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLEKHG2Q9H7P9 1386 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GIMAP1-GIMAP5A0A087WTJ2 511 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A087WV48 116 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP3A7-CYP3A51PA0A087WV96 503 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3DA0A087WVF3 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3IA0A087WXS9 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3EA0A087X179 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3KA0A087X1G2 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC187A0A096LP49 1063 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LOC105369274A0A096LPK9 316 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A0B4J203 849 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LOC102723532A0A0G2JNH3 316 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRBV2A0A0J9YWF9 115 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEX13CA0A0J9YWL9 993 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 EDDM13A0A1B0GTR0 161 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A1B0GWJ7 208 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRBC2A0A5B9 178 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GXYLT2A0PJZ3 443 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms