RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 C6orf52Q5T4I8 152 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 TMEM198Q66K66 360 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 ABRAXAS1Q6UWZ7 409 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 CAMKK2Q96RR4 588 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 TRMOQ9BU70 441 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 MRPL9Q9BYD2 267 aaKnown RBP12.71□□□□□ -0.38
USP53-209ENST00000514665 GBA3Q9H227 469 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 XRN1Q8IZH2 1706 aaKnown RBP12.71□□□□□ -0.38
USP53-209ENST00000514665 FAM220BPB1ANY3 271 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 TBX10O75333 385 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 C22orf31O95567 290 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ST13P50502 369 aaKnown RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 ATP6V0D1P61421 351 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 TNK2Q07912 1038 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ACBD5Q5T8D3 534 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 SYPL2Q5VXT5 272 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ADAMTSL2Q86TH1 951 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 CYP4Z1Q86W10 505 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 SPPL2CQ8IUH8 684 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ELMO1Q92556 727 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ESAMQ96AP7 390 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 GMIPQ9P107 970 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 IFRD1O00458 451 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 SLC22A3O75751 556 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 TCEA3O75764 348 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 CHRNGP07510 517 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 VAV1P15498 845 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PPP2R1BP30154 601 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 AIF1P55008 147 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 GPX6P59796 221 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ARHGAP17Q68EM7 881 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 RALGPS2Q86X27 583 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 GPR156Q8NFN8 814 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PPP3R2Q96LZ3 170 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 TSSK3Q96PN8 268 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 HNRNPABQ99729 332 aaKnown RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 OSBPL11Q9BXB4 747 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PCDH12Q9NPG4 1184 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PADI3Q9ULW8 664 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PCDHB12Q9Y5F1 795 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 COMMD3-BMI1R4GMX3 469 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ATRNL1Q5VV63 1379 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PPEF2O14830 753 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ZBTB11O95625 1053 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 ALOX12P18054 663 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 L1CAMP32004 1257 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 CRATP43155 626 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 IDH3AP50213 366 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 ILF2Q12905 390 aaKnown RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 GRIK3Q13003 919 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 C1DQ13901 141 aaKnown RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 TRIM25Q14258 630 aaKnown RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 ARMC4Q5T2S8 1044 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 SDE2Q6IQ49 451 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PNPLA3Q9NST1 481 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 SLC7A8Q9UHI5 535 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 POMPQ9Y244 141 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 NALCNQ8IZF0 1738 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PRR23D1E9PI22 279 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 SERPINI2O75830 405 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 CYP7B1O75881 506 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 CST1P01037 141 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PRR23D2P0DMB1 279 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 IDO1P14902 403 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PSEN1P49768 467 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 DAOAP59103 153 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 MTA1Q13330 715 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PITRM1Q5JRX3 1037 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PERM1Q5SV97 790 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 USP45Q70EL2 814 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 RD3Q7Z3Z2 195 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 SVOPQ8N4V2 548 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 C10orf53Q8N6V4 93 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 LMO3Q8TAP4 145 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 CEP44Q9C0F1 390 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 HMX1Q9NP08 348 aaPredicted RBP12.7□□□□□ -0.38
USP53-209ENST00000514665 C3orf18Q9UK00 162 aa12.7□□□□□ -0.38
USP53-209ENST00000514665 PTPRJQ12913 1337 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 ZNF37AP17032 561 aaPredicted RBP12.69□□□□□ -0.38
USP53-209ENST00000514665 HNF4AP41235 474 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 ANXA11P50995 505 aaKnown RBP12.69□□□□□ -0.38
USP53-209ENST00000514665 POLR2LP62875 67 aaKnown RBP12.69□□□□□ -0.38
USP53-209ENST00000514665 MPP2Q14168 576 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 LIN52Q52LA3 116 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 DCAKDQ8WVC6 231 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 C19orf60Q96EN9 201 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 B3GALT6Q96L58 329 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 SYNDIG1Q9H7V2 258 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP53-209ENST00000514665 FADS3Q9Y5Q0 445 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 SPEF2Q9C093 1822 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 E9PAM4 449 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 OTCP00480 354 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 AMHP03971 560 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 COL6A2P12110 1019 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 SMPD1P17405 629 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 GRK4P32298 578 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 PRKAG1P54619 331 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 TCEA2Q15560 299 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 CIR1Q86X95 450 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms