RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 RIPOR3Q96MK2 946 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 RNF157Q96PX1 679 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 SERINC2Q96SA4 455 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 CPXM1Q96SM3 734 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 TCF25Q9BQ70 676 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 TRIM56Q9BRZ2 755 aaKnown RBP7.46□□□□□ -1.22
CLIP1-205ENST00000514271 DRC3Q9H069 523 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 PLGRKTQ9HBL7 147 aa7.46□□□□□ -1.22
CLIP1-205ENST00000514271 DENND4AQ7Z401 1863 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PI4K2BG5E9Z4 385 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 HTRA2O43464 458 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CBFA2T3O75081 653 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CLASP2O75122 1294 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 XYLBO75191 536 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CXCL14O95715 111 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 GLUD1P00367 558 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 ITGB3P05106 788 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 JUNP05412 331 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CCDC159P0C7I6 412 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PRR35P0CG20 571 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 DDX6P26196 483 aaKnown RBP eCLIP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 GNA15P30679 374 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 POLR2BP30876 1174 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 GATMP50440 423 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 SERPINB9P50453 376 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CCT8P50990 548 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 ATP4BP51164 291 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 RPL10AP62906 217 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 GALNT1Q10472 559 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 FASTKD1Q53R41 847 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 OVOS1Q6IE37 1185 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 NIPAL1Q6NVV3 410 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PMF1Q6P1K2 205 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 LRRC8BQ6P9F7 803 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 RIMKLAQ8IXN7 391 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 TCEAL8Q8IYN2 117 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 DSELQ8IZU8 1212 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 VN1R2Q8NFZ6 395 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 TRUB1Q8WWH5 349 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 OR52B2Q96RD2 323 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CDX2Q99626 313 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 REPIN1Q9BWE0 567 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 FAM96AQ9H5X1 160 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 RYDENQ9NUL5 291 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PNPOQ9NVS9 261 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 TMEM9Q9P0T7 183 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 ITGB1BP2Q9UKP3 347 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PMF1-BGLAPU3KQ54 211 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 MYO16Q9Y6X6 1858 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 FUT4P22083 530 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 NSFP46459 744 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 OSTNP61366 133 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CDC20Q12834 499 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 GPR17Q13304 367 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 DPY19L1Q2PZI1 675 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 LEXMQ3ZCV2 418 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 DEPDC1Q5TB30 811 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 FAM171A1Q5VUB5 890 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 KIAA1614Q5VZ46 1190 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PDPK2PQ6A1A2 396 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CDR2LQ86X02 465 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 ELMOD1Q8N336 334 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 PPFIBP2Q8ND30 876 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 OVCA2Q8WZ82 227 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 EFHD2Q96C19 240 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 NMD3Q96D46 503 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 MCEEQ96PE7 176 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 KLF6Q99612 283 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 SNX25Q9H3E2 840 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 COG4Q9H9E3 785 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 MEAF6Q9HAF1 191 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 KLHL11Q9NVR0 708 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 THG1LQ9NWX6 298 aaKnown RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 HACD3Q9P035 362 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 UXTQ9UBK9 157 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-205ENST00000514271 FBXW11Q9UKB1 542 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 ERGIC3Q9Y282 383 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 RAD54BQ9Y620 910 aa7.45□□□□□ -1.22
CLIP1-205ENST00000514271 CASTOR2A6NHX0 329 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 FXYD1O00168 92 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 SOX1O00570 391 aaPredicted RBP7.44□□□□□ -1.22
CLIP1-205ENST00000514271 ABLIM3O94929 683 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 HOXB9P17482 250 aaPredicted RBP7.44□□□□□ -1.22
CLIP1-205ENST00000514271 ADAM15Q13444 863 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 SMAD4Q13485 552 aaKnown RBP7.44□□□□□ -1.22
CLIP1-205ENST00000514271 PDK1Q15118 436 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 VARS2Q5ST30 1063 aaKnown RBP7.44□□□□□ -1.22
CLIP1-205ENST00000514271 LIN9Q5TKA1 542 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 C1orf146Q5VVC0 180 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 ERAP2Q6P179 960 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 DENND1BQ6P3S1 775 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 CD300LGQ6UXG3 332 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 C10orf107Q8IVU9 208 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 PLD6Q8N2A8 252 aaKnown RBP7.44□□□□□ -1.22
CLIP1-205ENST00000514271 CATSPER1Q8NEC5 780 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 NXPE3Q969Y0 559 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 ZUFSPQ96AP4 578 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 FCRL3Q96P31 734 aaPredicted RBP7.44□□□□□ -1.22
CLIP1-205ENST00000514271 C11orf70Q9BRQ4 267 aa7.44□□□□□ -1.22
CLIP1-205ENST00000514271 ZNF670Q9BS34 389 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms