RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TSR3Q9UJK0 312 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 CDV3Q9UKY7 258 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SHOC2Q9UQ13 582 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 TRPM6Q9BX84 2022 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SIGLEC16A6NMB1 481 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ENC1O14682 589 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SNPHO15079 494 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 INSIG1O15503 277 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 MAP3K7O43318 606 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 LSM8O95777 96 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 S100A1P23297 94 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ANKRD20A2Q5SQ80 823 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 FAXCQ5TGI0 409 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ANKRD20A1Q5TYW2 823 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ANKRD20A3Q5VUR7 823 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 OTUD1Q5VV17 481 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 HGSNATQ68CP4 663 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 TRIM72Q6ZMU5 477 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ETFBKMTQ8IXQ9 262 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 AHI1Q8N157 1196 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 KIF2BQ8N4N8 673 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 TRIML2Q8N7C3 387 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 IRGQQ8WZA9 623 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SERAC1Q96JX3 654 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 WDR24Q96S15 920 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 KCTD15Q96SI1 283 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 LGMNQ99538 433 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 TMEM59LQ9UK28 342 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 NCKAP1Q9Y2A7 1128 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 PRRC2CQ9Y520 2896 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 A0A1W2PQF6 199 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ATP9BO43861 1147 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ZBTB11O95625 1053 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 PDE1BQ01064 536 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 KIF5AQ12840 1032 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 HADHQ16836 314 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 C6orf118Q5T5N4 469 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 LYSMD4Q5XG99 296 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 Q6ZNB5 142 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF473Q8WTR7 871 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SKA1Q96BD8 255 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 OTUB2Q96DC9 234 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 CCT8L2Q96SF2 557 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SEMA4AQ9H3S1 761 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 IL21RQ9HBE5 538 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 OBP2AQ9NY56 170 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 IL37Q9NZH6 218 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 TMCO1Q9UM00 188 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF148Q9UQR1 794 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 TIMM22Q9Y584 194 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 A0A1W2PQC6 194 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 K7ESF4 209 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PMPCBO75439 489 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CYLC1P35663 651 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF143P52747 638 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 MRPS35P82673 323 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 DHX9Q08211 1270 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CNTN1Q12860 1018 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RCN2Q14257 317 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ERMARDQ5T6L9 678 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RETSATQ6NUM9 610 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RAD9BQ6WBX8 426 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SYT13Q7L8C5 426 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ALDH16A1Q8IZ83 802 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC25A41Q8N5S1 370 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 GDAP1Q8TB36 358 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RAPGEF5Q92565 580 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RMDN1Q96DB5 314 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PPP1R36Q96LQ0 422 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 BPIFA3Q9BQP9 254 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 UQCC2Q9BRT2 126 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 EDEM2Q9BV94 578 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 LACRTQ9GZZ8 138 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ATPIF1Q9UII2 106 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ZMYM5Q9UJ78 669 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 EPN1Q9Y6I3 576 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ANAPC1Q9H1A4 1944 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 H7C0C1 242 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 DDX3YO15523 660 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 LATO43561 262 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 LZTS3O60299 673 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 MMP20O60882 483 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CLDN11O75508 207 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 JCHAINP01591 159 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 COMTP21964 271 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CES1P23141 567 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ATP5OP48047 213 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CXCR3P49682 368 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CST6Q15828 149 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ARMC12Q5T9G4 340 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 DCAF12L1Q5VU92 463 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ALS2CLQ60I27 953 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SEL1L3Q68CR1 1132 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 UNC5DQ6UXZ4 953 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PTAR1Q7Z6K3 402 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF677Q86XU0 584 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CCNJLQ8IV13 435 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 TC2NQ8N9U0 490 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 DEFB124Q8NES8 71 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 STK32AQ8WU08 396 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms