RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RORBQ92753 470 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TOP1MTQ969P6 601 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 LRRC39Q96DD0 335 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ZHX1-C8orf76Q96EF9 292 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 BTN2A3PQ96KV6 586 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 NEDD4LQ96PU5 975 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 USB1Q9BQ65 265 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 NUAK2Q9H093 628 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 RSAD1Q9HA92 442 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 VWA7Q9Y334 891 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PSAT1Q9Y617 370 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 POLRMTO00411 1230 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 SRP72O76094 671 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MT-CO1P00395 513 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 HTR1AP08908 422 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 IL7P13232 177 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 GALNT3Q14435 633 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 DNAJC24Q6P3W2 148 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ARSKQ6UWY0 536 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 NECAB2Q7Z6G3 386 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TLK2Q86UE8 772 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 P2RY8Q86VZ1 359 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM151BQ8IW70 566 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MICU2Q8IYU8 434 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 KCTD6Q8NC69 237 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ST13P5Q8NFI4 369 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 DYNC2LI1Q8TCX1 351 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PHF10Q8WUB8 498 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 DEDD2Q8WXF8 326 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MUL1Q969V5 352 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 NODALQ96S42 347 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 SH2D3AQ9BRG2 576 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 HPS4Q9NQG7 708 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 FBXL12Q9NXK8 326 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MTMR4Q9NYA4 1195 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TFCP2L1Q9NZI6 479 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PCDHB4Q9Y5E5 795 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MAGED1Q9Y5V3 778 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 CCDC78A2IDD5 438 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 FAM159BA6NKW6 160 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 E5RI56 91 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PLD2O14939 933 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 CHRNA1P02708 482 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 SAT1P21673 171 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TBXAS1P24557 533 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 NAGLUP54802 743 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 BEST2Q8NFU1 509 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TMC2Q8TDI7 906 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PPP1R13LQ8WUF5 828 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 C8orf37Q96NL8 207 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 SLIRPQ9GZT3 109 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PRDM8Q9NQV8 689 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 EVA1BQ9NVM1 165 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 PAK1IP1Q9NWT1 392 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF224Q9NZL3 707 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 A0A1B0GUL6 1792 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 PNMA6FA0A0J9YX94 578 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 USP17L10C9JJH3 530 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 GRID2O43424 1007 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CYP2A6P11509 494 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 MTHFD1P11586 935 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 POU3F3P20264 500 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 DDOSTP39656 456 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 MAP2K4P45985 399 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 ADARB1P78563 741 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 SLAMF1Q13291 335 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 KIAA1841Q6NSI8 718 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM270Q6UE05 265 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 C8orf59Q8N0T1 100 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 OR8H2Q8N162 312 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 BDH2Q9BUT1 245 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM39AQ9NV64 488 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 FBXO5Q9UKT4 447 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TMPRSS11EQ9UL52 423 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 MRPS7Q9Y2R9 242 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM191CA6NGB0 347 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 RGS5O15539 181 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CCNE2O96020 404 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 YBX3P16989 372 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CCNCP24863 283 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CLK1P49759 484 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CLK2P49760 499 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 NOMO3P69849 1222 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TRAF3Q13114 568 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 FASTKQ14296 549 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TAF2Q6P1X5 1199 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TXNDC11Q6PKC3 985 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF517Q6ZMY9 492 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 NRARPQ7Z6K4 114 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 OR9I1Q8NGQ6 314 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 AFG1LQ8WV93 481 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 LGALS12Q96DT0 336 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 GON7Q9BXV9 100 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 RHOBTB2Q9BYZ6 727 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 FANCFQ9NPI8 374 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 DIABLOQ9NR28 239 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CIB4A0PJX0 185 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 KPNA7A9QM74 516 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 LINC01387J3KSC0 135 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 GABARAPO95166 117 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms