RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CNGA3Q16281 694 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 TMEM259Q4ZIN3 620 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 LRRC66Q68CR7 880 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 DENND5AQ6IQ26 1287 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 C8orf74Q6P047 294 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 ARMCX6Q7L4S7 300 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 LINC00523Q86TU6 105 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 SLC41A1Q8IVJ1 513 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 CPT1BQ92523 772 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 SNX19Q92543 992 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 BIRC7Q96CA5 298 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 DUSP15Q9H1R2 295 aaPredicted RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 PIH1D1Q9NWS0 290 aaKnown RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 ZBTB32Q9Y2Y4 487 aaPredicted RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 SPO11Q9Y5K1 396 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 C1orf232A0A0U1RR37 186 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 FAM187AA6NFU0 413 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 MEI4A8MW99 385 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 MMP20O60882 483 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 HEXIM1O94992 359 aaKnown RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 TPSB2P20231 275 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 MAGEA6P43360 314 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 ARHGEF7Q14155 803 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 TPSAB1Q15661 275 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 ANKRD22Q5VYY1 191 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 CRTC1Q6UUV9 634 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 PPP1R21Q6ZMI0 780 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 NOA1Q8NC60 698 aaKnown RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 TCRBV7S3A2A0A539 114 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 IGLON5A6NGN9 336 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 SLC4A1P02730 911 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 C6P13671 934 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 PTGER3P43115 390 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 CCR5P51681 352 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 LIPIQ6XZB0 460 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 OR52K1Q8NGK4 314 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 BLOC1S5Q8TDH9 187 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 FOXJ1Q92949 421 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 TRIM31Q9BZY9 425 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 ARNT2Q9HBZ2 717 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 MAGEE1Q9HCI5 957 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 ZNF711Q9Y462 761 aa29.68■■■□□ 2.34
LIMCH1-211ENST00000509638 LATO43561 262 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 TMEM63AO94886 807 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 GRIA1P42261 906 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 ZNF284Q2VY69 593 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 DENND2CQ68D51 928 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 LYSMD3Q7Z3D4 306 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 ATOH1Q92858 354 aaPredicted RBP29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 KLK6Q92876 244 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 ZC3H10Q96K80 434 aaKnown RBP29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 EPC1Q9H2F5 836 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 SHOC2Q9UQ13 582 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 COQ6Q9Y2Z9 468 aa29.67■■■□□ 2.34
LIMCH1-211ENST00000509638 METTL12A8MUP2 240 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 DNALI1O14645 258 aaPredicted RBP29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 CDK16Q00536 496 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 SPDYCQ5MJ68 293 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 IZUMO3Q5VZ72 239 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 MMGT1Q8N4V1 131 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 DNAAF3Q8N9W5 541 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 IRF2BPLQ9H1B7 796 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 FAM86C1Q9NVL1 165 aa29.66■■■□□ 2.34
LIMCH1-211ENST00000509638 EFCAB8A8MWE9 144 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 ZNF30P17039 623 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 IVDP26440 423 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 DHPSP49366 369 aaPredicted RBP29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 CDH17Q12864 832 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 LPAL2Q16609 132 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 CDKN3Q16667 212 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 RNASEH2BQ5TBB1 312 aaKnown RBP29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 PPIL6Q8IXY8 311 aa29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 TPX2Q9ULW0 747 aaKnown RBP29.65■■■□□ 2.34
LIMCH1-211ENST00000509638 TM7SF2O76062 418 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 RHOBTB1O94844 696 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 CLDN7O95471 211 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 FGL2Q14314 439 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 SETMARQ53H47 684 aaPredicted RBP29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 LYSMD4Q5XG99 296 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 GLT6D1Q7Z4J2 308 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 SNF8Q96H20 258 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 SRPK1Q96SB4 655 aaKnown RBP29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 ERP44Q9BS26 406 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 CASS4Q9NQ75 786 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 HACD3Q9P035 362 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 LAMA1P25391 3075 aa29.64■■■□□ 2.34
LIMCH1-211ENST00000509638 AURKAO14965 403 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 LZTS3O60299 673 aaPredicted RBP29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 ACOX1Q15067 660 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 ZNF534Q76KX8 674 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 HSD11B1LQ7Z5J1 315 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 NAT8LQ8N9F0 302 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 LRRC1Q9BTT6 524 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 C1QTNF2Q9BXJ5 285 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 SLC17A9Q9BYT1 436 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 GPR63Q9BZJ6 419 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 ZFYVE1Q9HBF4 777 aa29.64■■■□□ 2.33
LIMCH1-211ENST00000509638 GOLGA8CPA6NN73 597 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 PSMD11O00231 422 aa29.63■■■□□ 2.33
LIMCH1-211ENST00000509638 SEC31AO94979 1220 aaKnown RBP29.63■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms