RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MMP14P50281 582 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 DSCR10P59022 87 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 SLC18A3Q16572 532 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 FBXO43Q4G163 708 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 SPINK14Q6IE38 97 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 SULT6B1Q6IMI4 303 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 TBC1D26Q86UD7 250 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 WDR63Q8IWG1 891 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 ATG16L2Q8NAA4 619 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 AGBL3Q8NEM8 1001 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 TM9SF4Q92544 642 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 SH3KBP1Q96B97 665 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 STAMBPL1Q96FJ0 436 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 RBM17Q96I25 401 aaKnown RBP2.74□□□□□ -1.97
NUP54-208ENST00000508604 LINC00479Q96M42 142 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 HERC2P3Q9BVR0 1158 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 PDZD7Q9H5P4 517 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 HDAC6Q9UBN7 1215 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 NFE2L3Q9Y4A8 694 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 A0A0G2JLW4 131 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 A0A0J9YWU9 116 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 ARHGEF9O43307 516 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 ITGA2P17301 1181 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 CD72P21854 359 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 RYKP34925 604 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 EFNA5P52803 228 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 PNLIPRP1P54315 467 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 NR1H2P55055 460 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 GAGE5Q13069 117 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 GAGE6Q13070 117 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 SIRPB2Q5JXA9 342 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 GPATCH4Q5T3I0 446 aaKnown RBP2.73□□□□□ -1.97
NUP54-208ENST00000508604 FAAP20Q6NZ36 180 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 ATF7IPQ6VMQ6 1270 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 WDR20Q8TBZ3 569 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 ABTB1Q969K4 478 aaPredicted RBP2.73□□□□□ -1.97
NUP54-208ENST00000508604 MASTLQ96GX5 879 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 ST6GAL2Q96JF0 529 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 POLR3CQ9BUI4 534 aaPredicted RBP2.73□□□□□ -1.97
NUP54-208ENST00000508604 TRIM15Q9C019 465 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 TMEM30AQ9NV96 361 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 RCOR1Q9UKL0 485 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 LRCH1Q9Y2L9 728 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 A3GALT2U3KPV4 340 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 NDUFAF8A1L188 74 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 KLRF2D3W0D1 207 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 NR5A2O00482 541 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 CHRM4P08173 479 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 S1PR1P21453 382 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 SERPINF1P36955 418 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 BLKP51451 505 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 PDE1BQ01064 536 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 SLC36A4Q6YBV0 504 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 TAOK1Q7L7X3 1001 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 STPG4Q8N801 248 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 RND1Q92730 232 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 SYT17Q9BSW7 474 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 G6PC2Q9NQR9 355 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 ZDHHC18Q9NUE0 388 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 CD207Q9UJ71 328 aa2.73□□□□□ -1.97
NUP54-208ENST00000508604 TAF1P21675 1872 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 MEIOCA2RUB1 952 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 HSPB2A8KAH6 182 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 SLC2A4P14672 509 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 RXRAP19793 462 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 CLK1P49759 484 aaKnown RBP2.72□□□□□ -1.97
NUP54-208ENST00000508604 RAD23BP54727 409 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 HSPB2Q16082 182 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 ZNF239Q16600 458 aaKnown RBP2.72□□□□□ -1.97
NUP54-208ENST00000508604 KRT24Q2M2I5 525 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 C15orf39Q6ZRI6 1047 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 C1orf87Q8N0U7 546 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 CPXM2Q8N436 756 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 LINS1Q8NG48 757 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 ZNF689Q96CS4 500 aaPredicted RBP2.72□□□□□ -1.97
NUP54-208ENST00000508604 RNFT2Q96EX2 444 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 SCRN2Q96FV2 425 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 ART5Q96L15 291 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 OPRPNQ99935 248 aaPredicted RBP2.72□□□□□ -1.97
NUP54-208ENST00000508604 TRIM51Q9BSJ1 452 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 BABAM1Q9NWV8 329 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 DACT1Q9NYF0 836 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 PAK5Q9P286 719 aa2.72□□□□□ -1.97
NUP54-208ENST00000508604 ZNF624Q9P2J8 865 aaPredicted RBP2.72□□□□□ -1.97
NUP54-208ENST00000508604 ADGRF5Q8IZF2 1346 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 A0A0U1RQF3 1178 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 A0A1W2PNU3 283 aaPredicted RBP2.71□□□□□ -1.98
NUP54-208ENST00000508604 SH2B2O14492 632 aaPredicted RBP2.71□□□□□ -1.98
NUP54-208ENST00000508604 GNB1P62873 340 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 GTF2H2Q13888 395 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 CBWD5Q5RIA9 395 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 STXBP5Q5T5C0 1151 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 GTF2H2CQ6P1K8 395 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 KCTD18Q6PI47 426 aaPredicted RBP2.71□□□□□ -1.98
NUP54-208ENST00000508604 CHERPQ8IWX8 916 aaKnown RBP2.71□□□□□ -1.98
NUP54-208ENST00000508604 ANKRD52Q8NB46 1076 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 SNAPC3Q92966 411 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 NLRC4Q9NPP4 1024 aa2.71□□□□□ -1.98
NUP54-208ENST00000508604 TLR8Q9NR97 1041 aaKnown RBP2.71□□□□□ -1.98
NUP54-208ENST00000508604 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms