RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 EPS8Q12929 822 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 TIGD5Q53EQ6 642 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 OTUD3Q5T2D3 398 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 UBR7Q8N806 425 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 UCMAQ8WVF2 138 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 LINGO1Q96FE5 620 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF558Q96NG5 402 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 DACH2Q96NX9 599 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 GIMAP4Q9NUV9 329 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 SNX6Q9UNH7 406 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 INVSQ9Y283 1065 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 TK2O00142 265 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 AHCYL1O43865 530 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 SMNDC1O75940 238 aaKnown RBP eCLIP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 APOA1P02647 267 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 PBLDP30039 288 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 CCDC81Q6ZN84 652 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ZDHHC13Q8IUH4 622 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 FSTL5Q8N475 847 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 AZIN2Q96A70 460 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 STK39Q9UEW8 545 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 STRCQ7RTU9 1775 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 DNAJB1P25685 340 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 GRK4P32298 578 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 RPL5P46777 297 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 B3GNT6Q6ZMB0 384 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 UNC5BQ8IZJ1 945 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 DDHD1Q8NEL9 900 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 FUBP3Q96I24 572 aaKnown RBP eCLIP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 TCF12Q99081 682 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ZCCHC2Q9C0B9 1178 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 GRIP2Q9C0E4 1043 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 CYTH4Q9UIA0 394 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 AP4B1Q9Y6B7 739 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 A0A0J9YYE9 177 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 KPNA5O15131 536 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ZSCAN9O15535 394 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 SEPT4O43236 478 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC7A4O43246 635 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 VCLP18206 1134 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ANXA11P50995 505 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 BLMHQ13867 455 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 PATL1Q86TB9 770 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 PROSER1Q86XN7 944 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 IFNLR1Q8IU57 520 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 SETD9Q8NE22 299 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 POP5Q969H6 163 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 EPS8L2Q9H6S3 715 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 OXSMQ9NWU1 459 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 IMPAD1Q9NX62 359 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 DNAJB4Q9UDY4 337 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 KLQ9UEF7 1012 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF229Q9UJW7 825 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 TLR6Q9Y2C9 796 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ATP11BQ9Y2G3 1177 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ECM29Q5VYK3 1845 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 TRAV19A0A0A6YYK7 116 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 EPB42P16452 691 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 NR1H2P55055 460 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 WNT7BP56706 349 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF33AQ06730 810 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 PRKG2Q13237 762 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 GPR158Q5T848 1215 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 STK32CQ86UX6 486 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 IGDCC3Q8IVU1 814 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 MED8Q96G25 268 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 LENG8Q96PV6 779 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 NPY6RQ99463 290 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 GTF2IRD1Q9UHL9 959 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 TEKT2Q9UIF3 430 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 GSTT1P30711 240 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 RABGGTBP53611 331 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 CDH4P55283 916 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 LPCAT4Q643R3 524 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 TRIM69Q86WT6 500 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 RBFAQ8N0V3 343 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 TSPAN14Q8NG11 270 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 EBF4Q9BQW3 602 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 C16orf70Q9BSU1 422 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SYT17Q9BSW7 474 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 MAGEH1Q9H213 219 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 RNF39Q9H2S5 420 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 DPP7Q9UHL4 492 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 RAB26Q9ULW5 256 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 PCDHB1Q9Y5F3 818 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 NR2E3Q9Y5X4 410 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 COMMD3-BMI1R4GMX3 469 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ATP6AP2A0A1C7CYW4 349 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 DHRS12A0PJE2 317 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 ATP6AP2O75787 350 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC1A2P43004 574 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 DUSP4Q13115 394 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 TAPT1Q6NXT6 567 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 CCDC149Q6ZUS6 474 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 OSTM1Q86WC4 334 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 CDYL2Q8N8U2 506 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 HEXDCQ8WVB3 486 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 EXOC2Q96KP1 924 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 SIGLEC10Q96LC7 697 aa10.78□□□□□ -0.68
LIMCH1-205ENST00000503057 CIPCQ9C0C6 399 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms