RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 PLTPP55058 493 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 PPP2CBP62714 309 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 PPP2CAP67775 309 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 CRADDP78560 199 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 CNGA3Q16281 694 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 USP39Q53GS9 565 aaKnown RBP13.6□□□□□ -0.23
CPNE1-227ENST00000498056 CERCAMQ5T4B2 595 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 CASC4Q6P4E1 433 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 WDR5BQ86VZ2 330 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 LONP2Q86WA8 852 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 CCDC25Q86WR0 208 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 GSPT2Q8IYD1 628 aaKnown RBP13.6□□□□□ -0.23
CPNE1-227ENST00000498056 FRMD1Q8N878 549 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 MCUQ8NE86 351 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 PPHLN1Q8NEY8 458 aaKnown RBP13.6□□□□□ -0.23
CPNE1-227ENST00000498056 FBXO25Q8TCJ0 367 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 SNX19Q92543 992 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 TMEM131Q92545 1883 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 UBXN4Q92575 508 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 FAM131CQ96AQ9 280 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 SCRN2Q96FV2 425 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 PWWP2AQ96N64 755 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 GPR174Q9BXC1 333 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 GPR63Q9BZJ6 419 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 SGK2Q9HBY8 427 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 ARNT2Q9HBZ2 717 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 PREBQ9HCU5 417 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 SYBUQ9NX95 663 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.6□□□□□ -0.23
CPNE1-227ENST00000498056 HACD3Q9P035 362 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 COQ6Q9Y2Z9 468 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 LRP4O75096 1905 aa13.6□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3DA0A087WVF3 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3IA0A087WXS9 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3EA0A087X179 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3KA0A087X1G2 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3FA6NER0 549 aaPredicted RBP13.59□□□□□ -0.23
CPNE1-227ENST00000498056 GOLGA8CPA6NN73 597 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3LB9A6J9 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 AP3B1O00203 1094 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TSPAN6O43657 245 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 BUD23O43709 281 aaKnown RBP13.59□□□□□ -0.23
CPNE1-227ENST00000498056 MMP20O60882 483 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 AVILO75366 819 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 C1SP09871 688 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3HP0C7X1 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 C6P13671 934 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 ZNF30P17039 623 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 BCKDHBP21953 392 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 MAT2AP31153 395 aaKnown RBP13.59□□□□□ -0.23
CPNE1-227ENST00000498056 HOXA6P31267 233 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 LIG3P49916 1009 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 ARL4CP56559 192 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 CAV1Q03135 178 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 MAP7D1Q3KQU3 841 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 BBS9Q3SYG4 887 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 CCDC38Q502W7 563 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 DNAJC21Q5F1R6 531 aaKnown RBP13.59□□□□□ -0.23
CPNE1-227ENST00000498056 SEL1L3Q68CR1 1132 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3GQ6DHY5 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3CQ6IPX1 549 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 CRTC1Q6UUV9 634 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 ZDHHC24Q6UX98 284 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 IFT20Q8IY31 132 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 TBC1D3Q8IZP1 549 aaPredicted RBP13.59□□□□□ -0.23
CPNE1-227ENST00000498056 OR2T34Q8NGX1 318 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 ART4Q93070 314 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 LYSMD1Q96S90 227 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 EPC1Q9H2F5 836 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 BFARQ9NZS9 450 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 SAMD15Q9P1V8 674 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 FNDC3AQ9Y2H6 1198 aaKnown RBP13.59□□□□□ -0.23
CPNE1-227ENST00000498056 PPIL1Q9Y3C6 166 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 ARL5AQ9Y689 179 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 PIKFYVEQ9Y2I7 2098 aa13.59□□□□□ -0.23
CPNE1-227ENST00000498056 ZFC3H1O60293 1989 aaKnown RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 CCDC163A0A0D9SF12 145 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 A0A1W2PQU0 124 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 MEI4A8MW99 385 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 AURKAO14965 403 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 TP73O15350 636 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 MAP3K13O43283 966 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 GALR2O43603 387 aaPredicted RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 LZTS3O60299 673 aaPredicted RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 FSBPO95073 299 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 CLDN7O95471 211 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 CRTAMO95727 393 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 MLNP12872 115 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 RPL6Q02878 288 aaKnown RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 DHX9Q08211 1270 aaKnown RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 SRSF5Q13243 272 aaKnown RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 ACOX1Q15067 660 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 TMEM52BQ4KMG9 183 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 ALS2CLQ60I27 953 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 KIAA1161Q6NSJ0 714 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 CAND1Q86VP6 1230 aaKnown RBP13.58□□□□□ -0.24
CPNE1-227ENST00000498056 HORMAD1Q86X24 394 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 PDIK1LQ8N165 341 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 MPP5Q8N3R9 675 aa13.58□□□□□ -0.24
CPNE1-227ENST00000498056 ZCCHC9Q8N567 271 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms