RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ACOX1Q15067 660 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 ELF2Q15723 593 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 CNGA3Q16281 694 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 PLK5Q496M5 336 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 IZUMO3Q5VZ72 239 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 LRRC66Q68CR7 880 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 DENND5AQ6IQ26 1287 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 ZC3H14Q6PJT7 736 aaKnown RBP11.93□□□□□ -0.5
CUX1-210ENST00000497815 CRTC1Q6UUV9 634 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 LYSMD3Q7Z3D4 306 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 LINC00523Q86TU6 105 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 C11orf74Q86VG3 221 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 HORMAD1Q86X24 394 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 SLC41A1Q8IVJ1 513 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 CPT1BQ92523 772 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 BIRC7Q96CA5 298 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 MYOCQ99972 504 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 DUSP15Q9H1R2 295 aaPredicted RBP11.93□□□□□ -0.5
CUX1-210ENST00000497815 KDM4CQ9H3R0 1056 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 EIF2B3Q9NR50 452 aaKnown RBP11.93□□□□□ -0.5
CUX1-210ENST00000497815 TPX2Q9ULW0 747 aaKnown RBP11.93□□□□□ -0.5
CUX1-210ENST00000497815 ZFR2Q9UPR6 939 aaKnown RBP11.93□□□□□ -0.5
CUX1-210ENST00000497815 SNX24Q9Y343 169 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 PPIL1Q9Y3C6 166 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 ZNF711Q9Y462 761 aa11.93□□□□□ -0.5
CUX1-210ENST00000497815 CACNA1IQ9P0X4 2223 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 ATXN2Q99700 1313 aaKnown RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 METTL12A8MUP2 240 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 DNALI1O14645 258 aaPredicted RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 AURKAO14965 403 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 SLC31A1O15431 190 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 BUD23O43709 281 aaKnown RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 TM7SF2O76062 418 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 TMEM63AO94886 807 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 SUN1O94901 812 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 HEXIM1O94992 359 aaKnown RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 PAK4O96013 591 aaPredicted RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 TPSB2P20231 275 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 MAOBP27338 520 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 RPS21P63220 83 aaKnown RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 SGCGQ13326 291 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 SEPT6Q14141 434 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 TPSAB1Q15661 275 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 ZNF284Q2VY69 593 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 TMEM259Q4ZIN3 620 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 PMS2CLQ68D20 193 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 KIAA1161Q6NSJ0 714 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 NEK5Q6P3R8 708 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 LIPIQ6XZB0 460 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 GLT6D1Q7Z4J2 308 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 HSD11B1LQ7Z5J1 315 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 TRIM69Q86WT6 500 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 PPIL6Q8IXY8 311 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 RGL4Q8IZJ4 473 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 MMGT1Q8N4V1 131 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 LRRN4CLQ8ND94 238 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 CADM4Q8NFZ8 388 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 SNF8Q96H20 258 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 ERP44Q9BS26 406 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 SLC17A9Q9BYT1 436 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 GPR63Q9BZJ6 419 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 MIR1-1HGQ9H1L0 117 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 L2HGDHQ9H9P8 463 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 MAGEE1Q9HCI5 957 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 FZD3Q9NPG1 666 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 UTP11Q9Y3A2 253 aaKnown RBP11.92□□□□□ -0.5
CUX1-210ENST00000497815 HCN4Q9Y3Q4 1203 aa11.92□□□□□ -0.5
CUX1-210ENST00000497815 EML5Q05BV3 1969 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 RHOBTB1O94844 696 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 C1SP09871 688 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 IVDP26440 423 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 ETV3P41162 512 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 MAGEA6P43360 314 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 RPL21P46778 160 aaKnown RBP11.91□□□□□ -0.5
CUX1-210ENST00000497815 CCR5P51681 352 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 SESN2P58004 480 aaPredicted RBP11.91□□□□□ -0.5
CUX1-210ENST00000497815 CDH17Q12864 832 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 FGL2Q14314 439 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 POU6F1Q14863 301 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 SETMARQ53H47 684 aaPredicted RBP11.91□□□□□ -0.5
CUX1-210ENST00000497815 CERCAMQ5T4B2 595 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 RNASEH2BQ5TBB1 312 aaKnown RBP11.91□□□□□ -0.5
CUX1-210ENST00000497815 LYSMD4Q5XG99 296 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 RFLNAQ6ZTI6 216 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 NAT8LQ8N9F0 302 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 FOXJ1Q92949 421 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 PCED1AQ9H1Q7 454 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 EBF2Q9HAK2 575 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 ZFYVE1Q9HBF4 777 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 ARNT2Q9HBZ2 717 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 BPIFA1Q9NP55 256 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 CASS4Q9NQ75 786 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 EIF2B4Q9UI10 523 aaKnown RBP11.91□□□□□ -0.5
CUX1-210ENST00000497815 CD84Q9UIB8 345 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 ANAPC5Q9UJX4 755 aa11.91□□□□□ -0.5
CUX1-210ENST00000497815 ESYT3A0FGR9 886 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 CCDC78A2IDD5 438 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 WNT9AO14904 365 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 RAD51BO15315 384 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms