RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TRIM15Q9C019 465 aa11.74□□□□□ -0.53
HDAC4-210ENST00000493582 PRDM12Q9H4Q4 367 aa11.74□□□□□ -0.53
HDAC4-210ENST00000493582 ACTR3BQ9P1U1 418 aa11.74□□□□□ -0.53
HDAC4-210ENST00000493582 TBC1D14Q9P2M4 693 aa11.74□□□□□ -0.53
HDAC4-210ENST00000493582 RGPD3A6NKT7 1758 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-210ENST00000493582 RGPD4Q7Z3J3 1758 aa11.74□□□□□ -0.53
HDAC4-210ENST00000493582 ZFC3H1O60293 1989 aaKnown RBP11.74□□□□□ -0.53
HDAC4-210ENST00000493582 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 AP3B1O00203 1094 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SNPHO15079 494 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 PLA2G6O60733 806 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 BDNFP23560 247 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CD68P34810 354 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 POU5F1BQ06416 359 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CTBP1Q13363 440 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 MEP1AQ16819 746 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 KIF19Q2TAC6 998 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CATSPEREQ5SY80 951 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 LCN8Q6JVE9 175 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ARMC8Q8IUR7 673 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 DNAJB14Q8TBM8 379 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 STON2Q8WXE9 905 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 MCMBPQ9BTE3 642 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CCDC90BQ9GZT6 254 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 MIR1-1HGQ9H1L0 117 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 MEAF6Q9HAF1 191 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ABCB10Q9NRK6 738 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 UBP1Q9NZI7 540 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ENPP5Q9UJA9 477 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 PMF1-BGLAPU3KQ54 211 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 TRIP11Q15643 1979 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 A0A0J9YYE9 177 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 M0R3G1 203 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 LDLRP01130 860 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ALDOCP09972 364 aaKnown RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CXCL8P10145 99 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 VDRP11473 427 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SLC6A2P23975 617 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SEPHS1P49903 392 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 APLP1P51693 650 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 NDST1P52848 882 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 RABL3Q5HYI8 236 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 DACT2Q5SW24 774 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CUZD1Q86UP6 607 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 GALNT13Q8IUC8 556 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 DENND6AQ8IWF6 608 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SIX5Q8N196 739 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 C1orf127Q8N9H9 656 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 DNERQ8NFT8 737 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 OR7A2PQ8NGA2 310 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 S100ZQ8WXG8 99 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 TRIB2Q92519 343 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 PHF21BQ96EK2 531 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 VMP1Q96GC9 406 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 C3orf30Q96M34 536 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 NEK6Q9HC98 313 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 THG1LQ9NWX6 298 aaKnown RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 KLHL8Q9P2G9 620 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 USP22Q9UPT9 525 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ANKRD6Q9Y2G4 727 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 NPHS1O60500 1241 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 DEAF1O75398 565 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 GABBR2O75899 941 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 FARP2O94887 1054 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 NFICP08651 508 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CHRNB1P11230 501 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 TCF3P15923 654 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 VBP1P61758 197 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SLC6A3Q01959 620 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 LAMC2Q13753 1193 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ADPRMQ3LIE5 342 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 HACD2Q6Y1H2 254 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CYHR1Q6ZMK1 362 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 PIWIL4Q7Z3Z4 852 aaKnown RBP11.73□□□□□ -0.53
HDAC4-210ENST00000493582 MFSD6LQ8IWD5 586 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SDCCAG3Q96C92 435 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 MAGED4Q96JG8 741 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 SLC30A3Q99726 388 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 CLSTN3Q9BQT9 956 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 DKK3Q9UBP4 350 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 PCDHGA8Q9Y5G5 932 aa11.73□□□□□ -0.53
HDAC4-210ENST00000493582 ASNA1O43681 348 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 NPM3O75607 178 aaKnown RBP11.72□□□□□ -0.53
HDAC4-210ENST00000493582 CAPN3P20807 821 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 AGXTP21549 392 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 CES1P23141 567 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 FSHRP23945 695 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 CXCR2P25025 360 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 CSRP3P50461 194 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 GP2P55259 537 aaKnown RBP11.72□□□□□ -0.53
HDAC4-210ENST00000493582 GRM1Q13255 1194 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 FRG1Q14331 258 aaKnown RBP11.72□□□□□ -0.53
HDAC4-210ENST00000493582 FAM83EQ2M2I3 478 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 UGT3A2Q3SY77 523 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 FUT11Q495W5 492 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.72□□□□□ -0.531e-7■■■■□ 25.7
HDAC4-210ENST00000493582 ZPBP2Q6X784 338 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 THAP5Q7Z6K1 395 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 FAM131BQ86XD5 332 aa11.72□□□□□ -0.53
HDAC4-210ENST00000493582 OR7G1Q8NGA0 311 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms