RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 BMP7P18075 431 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 HOXC8P31273 242 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 RAB28P51157 221 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 BMXP51813 675 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 CAPZA1P52907 286 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 SNAPC1Q16533 368 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 SMU1Q2TAY7 513 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 NHSL2Q5HYW2 709 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 ARMC4Q5T2S8 1044 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 DAB2IPQ5VWQ8 1189 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 CYB5R4Q7L1T6 521 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 TRIM74Q86UV6 250 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 TRIM73Q86UV7 250 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 C1orf210Q8IVY1 113 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 Q8N3U1 123 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 C10orf53Q8N6V4 93 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 IQUBQ8NA54 791 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 FAM47BQ8NA70 645 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 BHLHE22Q8NFJ8 381 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-212ENST00000493341 OR4N2Q8NGD1 307 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 OR8K5Q8NH50 307 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 CFAP61Q8NHU2 1237 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 HUS1BQ8NHY5 278 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 HDAC7Q8WUI4 952 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 SLC25A23Q9BV35 468 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 NUP85Q9BW27 656 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 WDR11Q9BZH6 1224 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 IPO11Q9UI26 975 aaKnown RBP4.76□□□□□ -1.65
VPS13A-212ENST00000493341 EDDM13A0A1B0GTR0 161 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 LNP1A1A4G5 178 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 DDX39AO00148 427 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 EBAG9O00559 213 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 KERAO60938 352 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 ELFN1P0C7U0 828 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SUPT20HL2P0C7V6 817 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 ETFAP13804 333 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 DNASE1P24855 282 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 PSMA3P25788 255 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 TAS2R40P59535 323 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SHBQ15464 509 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SUPT20HL1Q3ZLR7 823 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 ZRANB3Q5FWF4 1079 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 PPP1R21Q6ZMI0 780 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SLC35F3Q8IY50 421 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 RBM15BQ8NDT2 890 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CMASQ8NFW8 434 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CTCFLQ8NI51 663 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 MR1Q95460 341 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CABS1Q96KC9 395 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 MGME1Q9BQP7 344 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SCNM1Q9BWG6 230 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 PLEKHB1Q9UF11 243 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 FZD1Q9UP38 647 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF148Q9UQR1 794 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 TCAF1Q9Y4C2 921 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 DNM1LO00429 736 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 OGG1O15527 345 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 STX6O43752 255 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 JRKO75564 520 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 TRUB2O95900 331 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SNRNP70P08621 437 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CTPS1P17812 591 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 DRD4P21917 467 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CLCNKBP51801 687 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CXCL9Q07325 125 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 GRSF1Q12849 480 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 PRAMEF19Q5SWL8 479 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 TRIM72Q6ZMU5 477 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 RBM44Q6ZP01 1051 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 ARL14EPQ8N8R7 260 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 IL17DQ8TAD2 202 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SYT17Q9BSW7 474 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 SEZ6LQ9BYH1 1024 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 XPO4Q9C0E2 1151 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 DNAJC18Q9H819 358 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 OLAHQ9NV23 265 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 CWC15Q9P013 229 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 MOSPD1Q9UJG1 213 aa4.75□□□□□ -1.65
VPS13A-212ENST00000493341 PA2G4Q9UQ80 394 aaKnown RBP4.75□□□□□ -1.65
VPS13A-212ENST00000493341 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 CCDC151A5D8V7 595 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 OTOL1A6NHN0 477 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 AKR1B15C9JRZ8 316 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 TMCC1O94876 653 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 HIST1H2ABP04908 130 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 SRD5A1P18405 259 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 HLA-DPA1P20036 260 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 HIST1H2ADP20671 130 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ACADLP28330 430 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 HOXA4Q00056 320 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ACTN3Q08043 901 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-212ENST00000493341 KLF10Q13118 480 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 KRT33BQ14525 404 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF273Q14593 569 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 KRTCAP3Q53RY4 240 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 TATDN1Q6P1N9 297 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 KCNV1Q6PIU1 500 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 CNSTQ6PJW8 725 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 HIST3H2AQ7L7L0 130 aa4.74□□□□□ -1.65
VPS13A-212ENST00000493341 RASAL3Q86YV0 1011 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms