RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 DNAJC18Q9H819 358 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 KAT14Q9H8E8 782 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 FANCFQ9NPI8 374 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 LIN7CQ9NUP9 197 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 INTS6Q9UL03 887 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 NENFQ9UMX5 172 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 DRG1Q9Y295 367 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 KCNK7Q9Y2U2 307 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PREX2Q70Z35 1606 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ABCC1P33527 1531 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ARHGAP5Q13017 1502 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 IGSF1Q8N6C5 1336 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 MYO5CQ9NQX4 1742 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SMIM30A4D0T7 59 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 GLOD5A6NK44 160 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 EFCAB8A8MWE9 144 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 A8MZ25 164 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 E5RJQ4 531 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 PSMD9O00233 223 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 TLR2O60603 784 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SEC22BO75396 215 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 GCATO75600 419 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 CCNDBP1O95273 360 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 MYBL1P10243 752 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 HOXC8P31273 242 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 RFC1P35251 1148 aaPredicted RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 THBS4P35443 961 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 PNPLA4P41247 253 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 NR4A2P43354 598 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SLC15A1P46059 708 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 COPB1P53618 953 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 PMS2P54278 862 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 FOXL2P58012 376 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 STARD6P59095 220 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 RPL7AP62424 266 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 TBL3Q12788 808 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 LMAN2Q12907 356 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SGCGQ13326 291 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 RUNX2Q13950 521 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ASTE1Q2TB18 679 aaPredicted RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 P3H1Q32P28 736 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 KBTBD12Q3ZCT8 623 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 FBXO43Q4G163 708 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 NHSL2Q5HYW2 709 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ABRAXAS1Q6UWZ7 409 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 C16orf89Q6UX73 402 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ANKRD13BQ86YJ7 626 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SFTPA1Q8IWL2 248 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 TMCO5AQ8N6Q1 288 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 NANOGP1Q8N7R0 232 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 FSIP1Q8NA03 581 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 RFWD2Q8NHY2 731 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 KIF18AQ8NI77 898 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SUN3Q8TAQ9 357 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ZCCHC10Q8TBK6 192 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ZNF622Q969S3 477 aaKnown RBP eCLIP3.29□□□□□ -1.883e-8■□□□□ 8.8
DEPDC1-204ENST00000489862 LRRC59Q96AG4 307 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ARRDC3Q96B67 414 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 CCDC17Q96LX7 622 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 DGAT2Q96PD7 388 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 PAFAH2Q99487 392 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 TSPY26PQ9H489 355 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 MID1IP1Q9NPA3 183 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 SPATS2LQ9NUQ6 558 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 TRNAU1APQ9NX07 287 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 CPSF2Q9P2I0 782 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 DNAJB11Q9UBS4 358 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 UBA2Q9UBT2 640 aaPredicted RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 CD207Q9UJ71 328 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 MOSPD1Q9UJG1 213 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 CPSF3Q9UKF6 684 aaKnown RBP3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 EHBP1L1Q8N3D4 1523 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 ABCC5O15440 1437 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 KIAA1107Q9UPP5 1409 aa3.29□□□□□ -1.88
DEPDC1-204ENST00000489862 KDM5CP41229 1560 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 MLH3Q9UHC1 1453 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 KIDINS220Q9ULH0 1771 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ZMYM4Q5VZL5 1548 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 SYCP2Q9BX26 1530 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 A0A1W2PRV1 198 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM90A8PA6NJQ4 464 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 SAC3D1A6NKF1 404 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 AQP7P3A6NL99 342 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 OR6C76A6NM76 312 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 C17orf100A8MU93 164 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TEX22C9J3V5 150 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 GRM8O00222 908 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 ADAM10O14672 748 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PER2O15055 1255 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CTIFO43310 598 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TXNL1O43396 289 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 RGS10O43665 173 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 PRPSAP2O60256 369 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 CCNT2O60583 730 aaKnown RBP3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 KAT7O95251 611 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 MT-CO3P00414 261 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM90A13PP0C7W8 464 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM90A24PP0C7X0 464 aa3.28□□□□□ -1.88
DEPDC1-204ENST00000489862 TMIGD3P0DMS9 266 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 1161.7 ms