RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 KDM7AQ6ZMT4 941 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 STRA8Q7Z7C7 330 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 GABPB2Q8TAK5 448 aaPredicted RBP21.71■■□□□ 1.07
SMC4-221ENST00000489573 CALML6Q8TD86 181 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 HDAC10Q969S8 669 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 MTBPQ96DY7 904 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 KLHL32Q96NJ5 620 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 MFSD1Q9H3U5 465 aa21.71■■□□□ 1.07
SMC4-221ENST00000489573 NLE1Q9NVX2 485 aaPredicted RBP21.71■■□□□ 1.07
SMC4-221ENST00000489573 TICRRQ7Z2Z1 1910 aa21.7■■□□□ 1.07
SMC4-221ENST00000489573 TRIM49D1C9J1S8 452 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 LEFTY1O75610 366 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 HLA-EP13747 358 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 PSMA3P25788 255 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 CSE1LP55060 971 aaKnown RBP21.7■■□□□ 1.06
SMC4-221ENST00000489573 PTPRCAPQ14761 206 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 PTPRRQ15256 657 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 SMAD2Q15796 467 aaKnown RBP21.7■■□□□ 1.06
SMC4-221ENST00000489573 ARSIQ5FYB1 569 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 GRTP1Q5TC63 336 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 NEPROQ6NW34 567 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 OR4K2Q8NGD2 314 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 GPR63Q9BZJ6 419 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 POLR3BQ9NW08 1133 aaPredicted RBP21.7■■□□□ 1.06
SMC4-221ENST00000489573 PPIL1Q9Y3C6 166 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 SPECC1L-ADORA2AF8WAN1 911 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 CCL22O00626 93 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 CTSLP07711 333 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 CTHP32929 405 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 GALK1P51570 392 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 GYS2P54840 703 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 BMPR2Q13873 1038 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 LEXMQ3ZCV2 418 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 EGFLAMQ63HQ2 1017 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 BRAT1Q6PJG6 821 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 USP45Q70EL2 814 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 LYSMD3Q7Z3D4 306 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 SLC44A3Q8N4M1 653 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 OR6P1Q8NGX9 317 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 DNASE1L2Q92874 299 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 TBATAQ96M53 351 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 LYSMD1Q96S90 227 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 RBBP8Q99708 897 aa21.7■■□□□ 1.06
SMC4-221ENST00000489573 FBRSL1Q9HCM7 1045 aaKnown RBP21.7■■□□□ 1.06
SMC4-221ENST00000489573 A0A1W2PPM1 405 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 TSPAN11A1L157 253 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 STX7O15400 261 aaKnown RBP21.69■■□□□ 1.06
SMC4-221ENST00000489573 MT-ND3P03897 115 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 HNF1BP35680 557 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 IL12RB1P42701 662 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 TNFRSF4P43489 277 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 POLR2LP62875 67 aaKnown RBP21.69■■□□□ 1.06
SMC4-221ENST00000489573 E2F5Q15329 346 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 UGP2Q16851 508 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 C9orf64Q5T6V5 341 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 EMC10Q5UCC4 262 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 ZNF470Q6ECI4 717 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 LMNTD2Q8IXW0 634 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 STK40Q8N2I9 435 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 OR8D1Q8WZ84 308 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 CDKN2AIPNLQ96HQ2 116 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 SELENOSQ9BQE4 189 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 HCN2Q9UL51 889 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 STARD13Q9Y3M8 1113 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 UNC80Q8N2C7 3258 aa21.69■■□□□ 1.06
SMC4-221ENST00000489573 COL4A2P08572 1712 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 C1orf232A0A0U1RR37 186 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 GOT2P00505 430 aaKnown RBP21.68■■□□□ 1.06
SMC4-221ENST00000489573 PRNPP04156 253 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 BRAFP15056 766 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 CREB1P16220 341 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 SPRP35270 261 aaPredicted RBP21.68■■□□□ 1.06
SMC4-221ENST00000489573 HMGCLP35914 325 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 SLC1A2P43004 574 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 LIMK2P53671 638 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 CBX1P83916 185 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 KIAA0408Q6ZU52 694 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 PTAR1Q7Z6K3 402 aaPredicted RBP21.68■■□□□ 1.06
SMC4-221ENST00000489573 DENND6AQ8IWF6 608 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 OTUD6BQ8N6M0 293 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 C2CD4AQ8NCU7 369 aaPredicted RBP21.68■■□□□ 1.06
SMC4-221ENST00000489573 HCAR2Q8TDS4 363 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 SCRN2Q96FV2 425 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 MCCC1Q96RQ3 725 aaPredicted RBP21.68■■□□□ 1.06
SMC4-221ENST00000489573 SMC6Q96SB8 1091 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 C8orf33Q9H7E9 229 aaPredicted RBP21.68■■□□□ 1.06
SMC4-221ENST00000489573 SUN2Q9UH99 717 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 PKP3Q9Y446 797 aa21.68■■□□□ 1.06
SMC4-221ENST00000489573 HMX2A2RU54 273 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 CCDC162PA2VCL2 907 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 ITGA2BP08514 1039 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 HNRNPLP14866 589 aaKnown RBP eCLIP21.67■■□□□ 1.062e-15■■■■■ 47.4
SMC4-221ENST00000489573 HADHAP40939 763 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 ATP1A2P50993 1020 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 ELAVL3Q14576 367 aaKnown RBP21.67■■□□□ 1.06
SMC4-221ENST00000489573 CDKN3Q16667 212 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 ZNF805Q5CZA5 627 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 MROH9Q5TGP6 573 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 AFTPHQ6ULP2 937 aa21.67■■□□□ 1.06
SMC4-221ENST00000489573 TPRG1Q6ZUI0 275 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms