RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CDK16Q00536 496 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 RPL6Q02878 288 aaKnown RBP10.34□□□□□ -0.75
SKA1-204ENST00000488454 SEMA5AQ13591 1074 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 PTK6Q13882 451 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 ARHGEF7Q14155 803 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 GALNT3Q14435 633 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 IHHQ14623 411 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 PIP5KL1Q5T9C9 394 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 AGBL4Q5VU57 503 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 NEK5Q6P3R8 708 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 PPP1R21Q6ZMI0 780 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 LPCAT2Q7L5N7 544 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 ZSWIM9Q86XI8 627 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 DNAAF3Q8N9W5 541 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 CXorf40AQ8TE69 158 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 VOPP1Q96AW1 172 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 SCRN2Q96FV2 425 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 CDK15Q96Q40 435 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 TBL1YQ9BQ87 522 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 GPR174Q9BXC1 333 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 PREBQ9HCU5 417 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 UTP11Q9Y3A2 253 aaKnown RBP10.34□□□□□ -0.75
SKA1-204ENST00000488454 FADS3Q9Y5Q0 445 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 ZDBF2Q9HCK1 2354 aa10.34□□□□□ -0.75
SKA1-204ENST00000488454 MUC22E2RYF6 1773 aaPredicted RBP10.34□□□□□ -0.75
SKA1-204ENST00000488454 A0A0J9YYE9 177 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 A8MX80 341 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 LZTS3O60299 673 aaPredicted RBP10.33□□□□□ -0.76
SKA1-204ENST00000488454 RNGTTO60942 597 aaKnown RBP10.33□□□□□ -0.76
SKA1-204ENST00000488454 FSBPO95073 299 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 PRLP01236 227 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 TRBC1P01850 177 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 PRKCGP05129 697 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 FGF1P05230 155 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 VIPR1P32241 457 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 HNF1BP35680 557 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 ABL2P42684 1182 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 SGCGQ13326 291 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 SIM2Q14190 667 aaPredicted RBP10.33□□□□□ -0.76
SKA1-204ENST00000488454 SPARCL1Q14515 664 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 ELF2Q15723 593 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 SLC1A5Q15758 541 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 TMEM52BQ4KMG9 183 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 LRRC73Q5JTD7 316 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 SIRPB2Q5JXA9 342 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 SYCP2LQ5T4T6 812 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 C8orf74Q6P047 294 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 RANBP10Q6VN20 620 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 JAMLQ86YT9 394 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 FRMD1Q8N878 549 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 ZBTB44Q8NCP5 570 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 CADM4Q8NFZ8 388 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 NELL1Q92832 810 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 FAM131CQ96AQ9 280 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 TRIB3Q96RU7 358 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 APOL2Q9BQE5 337 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 CARD6Q9BX69 1037 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 RAB17Q9H0T7 212 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 PCED1AQ9H1Q7 454 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 KCNH6Q9H252 994 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 CD93Q9NPY3 652 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 EIF2B3Q9NR50 452 aaKnown RBP10.33□□□□□ -0.76
SKA1-204ENST00000488454 RAB23Q9ULC3 237 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 TPX2Q9ULW0 747 aaKnown RBP10.33□□□□□ -0.76
SKA1-204ENST00000488454 PPIL1Q9Y3C6 166 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 NEU2Q9Y3R4 380 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 SHROOM3Q8TF72 1996 aa10.33□□□□□ -0.76
SKA1-204ENST00000488454 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 A0A1W2PQU0 124 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 EFCAB8A8MWE9 144 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 AREL1O15033 823 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 RAD51CO43502 376 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 MMP20O60882 483 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 USP12O75317 370 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 TM7SF2O76062 418 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 SUN1O94901 812 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 ALPIP09923 528 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 ELFN1P0C7U0 828 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 ITIH2P19823 946 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 ADRA1AP35348 466 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 LIG3P49916 1009 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 CCR5P51681 352 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 TAS2R38P59533 333 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 SEMG2Q02383 582 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 SRSF5Q13243 272 aaKnown RBP10.32□□□□□ -0.76
SKA1-204ENST00000488454 LAMB3Q13751 1172 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 GLE1Q53GS7 698 aaKnown RBP10.32□□□□□ -0.76
SKA1-204ENST00000488454 SPDYCQ5MJ68 293 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 KIAA0895LQ68EN5 471 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 KCTD11Q693B1 232 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 KIAA1161Q6NSJ0 714 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 PRR23BQ6ZRT6 265 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 DPPA4Q7L190 304 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 HORMAD1Q86X24 394 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 KLHDC8BQ8IXV7 354 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 PPIL6Q8IXY8 311 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 TMEFF1Q8IYR6 380 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 MMGT1Q8N4V1 131 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 DEFB119Q8N690 84 aa10.32□□□□□ -0.76
SKA1-204ENST00000488454 BBOF1Q8ND07 529 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms