RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SPOCK2Q92563 424 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 CENPTQ96BT3 561 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 TEKT5Q96M29 485 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 SLC25A51Q9H1U9 297 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 GLOD4Q9HC38 313 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 MBNL1Q9NR56 388 aaKnown RBP14.81□□□□□ -0.04
USP4-212ENST00000486549 TDRD6O60522 2096 aaKnown RBP14.81□□□□□ -0.04
USP4-212ENST00000486549 CABIN1Q9Y6J0 2220 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 A0A1B0GTQ1 180 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 MTSS1O43312 755 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 SH3BP5O60239 455 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 RECQL5O94762 991 aaPredicted RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 HEXIM1O94992 359 aaKnown RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 PCCBP05166 539 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 ZNF883P0CG24 379 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 RBP3P10745 1247 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 LHCGRP22888 699 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 HNF1BP35680 557 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 RABIFP47224 123 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 ARRB1P49407 418 aaPredicted RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 PDE1CQ14123 709 aaPredicted RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 ARHGEF7Q14155 803 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 GALNT3Q14435 633 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 MEI1Q5TIA1 1274 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 DARS2Q6PI48 645 aaKnown RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 PID1Q7Z2X4 250 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 TSPAN33Q86UF1 283 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 GATAD2AQ86YP4 633 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 NAXDQ8IW45 347 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 ZNF567Q8N184 647 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 SPATA22Q8NHS9 363 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 FAM174AQ8TBP5 190 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 SCRN2Q96FV2 425 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 IMP4Q96G21 291 aaKnown RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 CAMK1GQ96NX5 476 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 MCCC1Q96RQ3 725 aaPredicted RBP14.8□□□□□ -0.04
USP4-212ENST00000486549 FERMT1Q9BQL6 677 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 UBP1Q9NZI7 540 aa14.8□□□□□ -0.04
USP4-212ENST00000486549 A0A0J9YYE9 177 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 TCRBV7S2A1N4TA0A589 114 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 CFAP69A5D8W1 941 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 GIPC1O14908 333 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 KCNN4O15554 427 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 DFNA5O60443 496 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 SDC3O75056 442 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 PMPCBO75439 489 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 TRIM16O95361 564 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 MT-CYBP00156 380 aaPredicted RBP14.79□□□□□ -0.04
USP4-212ENST00000486549 PRLP01236 227 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 TRBC1P01850 177 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 CD68P34810 354 aaPredicted RBP14.79□□□□□ -0.04
USP4-212ENST00000486549 THOP1P52888 689 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 GSE1Q14687 1217 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 SHBQ15464 509 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 WSCD2Q2TBF2 565 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 ZNF542PQ5EBM4 170 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 TPRG1LQ5T0D9 272 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 LRRC66Q68CR7 880 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 PIP4P1Q86T03 277 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 OXR1Q8N573 874 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 TRIM58Q8NG06 486 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 NUS1Q96E22 293 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 IFT43Q96FT9 208 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 PDLIM2Q96JY6 352 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 VAT1Q99536 393 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 CAAP1Q9H8G2 361 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 ERVMER34-1Q9H9K5 563 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 RSPH14Q9UHP6 348 aa14.79□□□□□ -0.04
USP4-212ENST00000486549 R3HDM2Q9Y2K5 976 aaKnown RBP14.79□□□□□ -0.04
USP4-212ENST00000486549 CAPN8A6NHC0 703 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 FLRT2O43155 660 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 ITGAVP06756 1048 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 GM2AP17900 193 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 EPHA8P29322 1005 aaPredicted RBP14.78□□□□□ -0.04
USP4-212ENST00000486549 ETV3P41162 512 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 PFN3P60673 137 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 RPL26P61254 145 aaKnown RBP14.78□□□□□ -0.04
USP4-212ENST00000486549 BNIP3Q12983 259 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 KLF1Q13351 362 aaPredicted RBP14.78□□□□□ -0.04
USP4-212ENST00000486549 FZD2Q14332 565 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 INPP5AQ14642 412 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 SUZ12Q15022 739 aaKnown RBP14.78□□□□□ -0.04
USP4-212ENST00000486549 QPCTQ16769 361 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 CRTC1Q6UUV9 634 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 HSD11B1LQ7Z5J1 315 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 DCP2Q8IU60 420 aaKnown RBP14.78□□□□□ -0.04
USP4-212ENST00000486549 TTC13Q8NBP0 860 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 PLA2G15Q8NCC3 412 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 CNTNAP3BQ96NU0 1288 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 ADGRE3Q9BY15 652 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 CNTNAP3Q9BZ76 1288 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 DNAJC28Q9NX36 388 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 RPL26L1Q9UNX3 145 aaKnown RBP14.78□□□□□ -0.04
USP4-212ENST00000486549 BTBD3Q9Y2F9 522 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 PPIL1Q9Y3C6 166 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 PCDHGB2Q9Y5G2 931 aa14.78□□□□□ -0.04
USP4-212ENST00000486549 GOLGA6CA6NDK9 693 aa14.77□□□□□ -0.05
USP4-212ENST00000486549 GOLGA6BA6NDN3 693 aa14.77□□□□□ -0.05
USP4-212ENST00000486549 YKT6O15498 198 aa14.77□□□□□ -0.05
USP4-212ENST00000486549 PCDHGA12O60330 932 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms