RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 LIG3P49916 1009 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 BLKP51451 505 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 DUSP3P51452 185 aaPredicted RBP7.04□□□□□ -1.28
VPS50-218ENST00000485994 SLC10A2Q12908 348 aaPredicted RBP7.04□□□□□ -1.28
VPS50-218ENST00000485994 EIF2B5Q13144 721 aaKnown RBP7.04□□□□□ -1.28
VPS50-218ENST00000485994 MTM1Q13496 603 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 PDE1CQ14123 709 aaPredicted RBP7.04□□□□□ -1.28
VPS50-218ENST00000485994 KRT81Q14533 505 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 ST3GAL2Q16842 350 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 WSCD2Q2TBF2 565 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 HS1BP3Q53T59 392 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 NCBP2-AS2Q69YL0 99 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 SLC9A4Q6AI14 798 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 MACC1Q6ZN28 852 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 ZSWIM9Q86XI8 627 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 NDUFAF2Q8N183 169 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 PGBD5Q8N414 524 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 PQLC3Q8N755 202 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 ATL2Q8NHH9 583 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 HDAC11Q96DB2 347 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 MRFAP1L1Q96HT8 127 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 PANX2Q96RD6 677 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 MCCC1Q96RQ3 725 aaPredicted RBP7.04□□□□□ -1.28
VPS50-218ENST00000485994 APOOQ9BUR5 198 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 TRIM5Q9C035 493 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 NOD2Q9HC29 1040 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 FZD3Q9NPG1 666 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 MBNL1Q9NR56 388 aaKnown RBP7.04□□□□□ -1.28
VPS50-218ENST00000485994 EVA1BQ9NVM1 165 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 HAUS2Q9NVX0 235 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 ITM2BQ9Y287 266 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 DGKBQ9Y6T7 804 aa7.04□□□□□ -1.28
VPS50-218ENST00000485994 CHD6Q8TD26 2715 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 TTC24A2A3L6 582 aaPredicted RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 LMO7DNF2Z398 122 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 K7ESM1 405 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 PDE2AO00408 941 aaPredicted RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 AQP9O43315 295 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RECQL5O94762 991 aaPredicted RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 KRT10P13645 584 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 C6P13671 934 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 JUNDP17535 347 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 SPINK2P20155 84 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 HTR1BP28222 390 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 SSR1P43307 286 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 NR2C2P49116 596 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 HK3P52790 923 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 THOP1P52888 689 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 TAS2R40P59535 323 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 KIAA1024LP59773 190 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RPL26P61254 145 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 IL9RQ01113 521 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 PPARDQ03181 441 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 DPTQ07507 201 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RALGDSQ12967 914 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 ZNF235Q14590 738 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 MESDQ14696 234 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RTP5Q14D33 572 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 TAZQ16635 292 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 CFAP58Q5T655 872 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 ESRP1Q6NXG1 681 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 ZCCHC8Q6NZY4 707 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 BZW1Q7L1Q6 419 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 PTAR1Q7Z6K3 402 aaPredicted RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 RHOT1Q8IXI2 618 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 FSTL5Q8N475 847 aaPredicted RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 ATPAF2Q8N5M1 289 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 NETO2Q8NC67 525 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RNF214Q8ND24 703 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 TPCN2Q8NHX9 752 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 PIH1D2Q8WWB5 315 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RAPGEF5Q92565 580 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 GLMNQ92990 594 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 GRAMD1AQ96CP6 724 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 EXOC2Q96KP1 924 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 COQ10AQ96MF6 247 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 LYSMD1Q96S90 227 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 IL12RB2Q99665 862 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 ANP32EQ9BTT0 268 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 BOCQ9BWV1 1114 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 NRSN2Q9GZP1 204 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 POLR1EQ9GZS1 481 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 UCKL1Q9NWZ5 548 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 DNAJC28Q9NX36 388 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 DDX56Q9NY93 547 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 DTLQ9NZJ0 730 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 SPASTQ9UBP0 616 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 KLF15Q9UIH9 416 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 DNPEPQ9ULA0 475 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 RPL26L1Q9UNX3 145 aaKnown RBP7.03□□□□□ -1.28
VPS50-218ENST00000485994 PCDHGC4Q9Y5F7 938 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 ALG6Q9Y672 507 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 ZZEF1O43149 2961 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 PKD1L2Q7Z442 2459 aa7.03□□□□□ -1.28
VPS50-218ENST00000485994 DSPP15924 2871 aaKnown RBP7.02□□□□□ -1.29
VPS50-218ENST00000485994 LY6G6EA0A0G2JKS1 128 aa7.02□□□□□ -1.29
VPS50-218ENST00000485994 BTNL10A8MVZ5 291 aa7.02□□□□□ -1.29
VPS50-218ENST00000485994 TAF4O00268 1085 aa7.02□□□□□ -1.29
VPS50-218ENST00000485994 HEXIM1O94992 359 aaKnown RBP7.02□□□□□ -1.29
VPS50-218ENST00000485994 RASGRP1O95267 797 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms