RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 POLBP06746 335 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 MMP2P08253 660 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 CYC1P08574 325 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 HNRNPCL4P0DMR1 293 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 AMD1P17707 334 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 DGKAP23743 735 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 PSMC2P35998 433 aaKnown RBP3.91□□□□□ -1.78
VPS41-213ENST00000485955 ECT2LQ008S8 904 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 ACSM2AQ08AH3 577 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 TNFAIP1Q13829 316 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 ATP13A5Q4VNC0 1218 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 PPP6R3Q5H9R7 873 aaPredicted RBP3.91□□□□□ -1.78
VPS41-213ENST00000485955 CPLX2Q6PUV4 134 aaKnown RBP3.91□□□□□ -1.78
VPS41-213ENST00000485955 CYP26C1Q6V0L0 522 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 DSTYKQ6XUX3 929 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 TDRPQ86YL5 185 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 ZCCHC9Q8N567 271 aaKnown RBP3.91□□□□□ -1.78
VPS41-213ENST00000485955 C11orf65Q8NCR3 313 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 SECTM1Q8WVN6 248 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 FIG4Q92562 907 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 FBXL8Q96CD0 374 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 ZNF570Q96NI8 536 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 BBS4Q96RK4 519 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 MPHOSPH8Q99549 860 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 KXD1Q9BQD3 176 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 TKTL2Q9H0I9 626 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 CNGB3Q9NQW8 809 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 PSAT1Q9Y617 370 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 STON1Q9Y6Q2 735 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 CUX2O14529 1486 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 CYSRT1A8MQ03 144 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 GUCY1B2O75343 617 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 RFPL2O75678 378 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 MT-CYBP00156 380 aaPredicted RBP3.9□□□□□ -1.79
VPS41-213ENST00000485955 SP1P08047 785 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 HSD3B1P14060 373 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 TCEA1P23193 301 aaKnown RBP3.9□□□□□ -1.79
VPS41-213ENST00000485955 POU1F1P28069 291 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 DDIT3P35638 169 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 GGT5P36269 586 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 FUT6P51993 359 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 UFM1P61960 85 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 SLC20A2Q08357 652 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 EIF2S3LQ2VIR3 472 aaKnown RBP3.9□□□□□ -1.79
VPS41-213ENST00000485955 TXNDC8Q6A555 127 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 CHERPQ8IWX8 916 aaKnown RBP3.9□□□□□ -1.79
VPS41-213ENST00000485955 KBTBD3Q8NAB2 608 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 SCCPDHQ8NBX0 429 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 GCC1Q96CN9 775 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 TMEM19Q96HH6 336 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 TTC14Q96N46 770 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 CSTL1Q9H114 145 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 PLEKHA4Q9H4M7 779 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 C17orf75Q9HAS0 396 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 HCN3Q9P1Z3 774 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 FAM96BQ9Y3D0 163 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 ADAM18Q9Y3Q7 739 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 DGKBQ9Y6T7 804 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 CGNL1Q0VF96 1302 aa3.9□□□□□ -1.79
VPS41-213ENST00000485955 PDS5AQ29RF7 1337 aaKnown RBP3.9□□□□□ -1.79
VPS41-213ENST00000485955 PRR23AA6NEV1 266 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 GAGE10A6NGK3 116 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 HLA-DOBP13765 273 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 PPP2R5BQ15173 497 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 RNPS1Q15287 305 aaKnown RBP3.89□□□□□ -1.79
VPS41-213ENST00000485955 RBBP5Q15291 538 aaKnown RBP3.89□□□□□ -1.79
VPS41-213ENST00000485955 TAF12Q16514 161 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 SLC9B1Q4ZJI4 515 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 STPG1Q5TH74 334 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 FOXL2NBQ6ZUU3 175 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 ODF3L1Q8IXM7 274 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 ZNF34Q8IZ26 560 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 CIARTQ8N365 385 aaPredicted RBP3.89□□□□□ -1.79
VPS41-213ENST00000485955 ZBTB2Q8N680 514 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 MAB21L3Q8N8X9 362 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 BEST2Q8NFU1 509 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 LNX1Q8TBB1 728 aaPredicted RBP3.89□□□□□ -1.79
VPS41-213ENST00000485955 PABPC5Q96DU9 382 aaKnown RBP3.89□□□□□ -1.79
VPS41-213ENST00000485955 FUZQ9BT04 418 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 BPIFA1Q9NP55 256 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 FBXO9Q9UK97 447 aaPredicted RBP3.89□□□□□ -1.79
VPS41-213ENST00000485955 VDAC3Q9Y277 283 aa3.89□□□□□ -1.79
VPS41-213ENST00000485955 TEX13CA0A0J9YWL9 993 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 TMEM202A6NGA9 273 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 TNPO2O14787 897 aaKnown RBP3.88□□□□□ -1.79
VPS41-213ENST00000485955 SOCS5O75159 536 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 TFP02787 698 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 HNRNPA1P09651 372 aaKnown RBP eCLIP3.88□□□□□ -1.79
VPS41-213ENST00000485955 CD58P19256 250 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 TROAPQ12815 778 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 CAMK1Q14012 370 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 HIST2H2ACQ16777 129 aaPredicted RBP3.88□□□□□ -1.79
VPS41-213ENST00000485955 TCTN1Q2MV58 587 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 KRTAP27-1Q3LI81 207 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 LCTLQ6UWM7 567 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 GSG1LQ6UXU4 331 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 SLC36A4Q6YBV0 504 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 TAOK1Q7L7X3 1001 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 LINGO2Q7L985 606 aa3.88□□□□□ -1.79
VPS41-213ENST00000485955 DSG4Q86SJ6 1040 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms