RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	TP53INP2	Q8IXH6	220 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	SLC35F3	Q8IY50	421 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	PAF1	Q8N7H5	531 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	TSEN2	Q8NCE0	465 aa	Known RBP	10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	GRAMD1A	Q96CP6	724 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	LRRC61	Q9BV99	259 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	C1QTNF7	Q9BXJ2	289 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	CPEB1	Q9BZB8	566 aa	Known RBP	10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	SLC13A1	Q9BZW2	595 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	NAT10	Q9H0A0	1025 aa	Known RBP	10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	PDF	Q9HBH1	243 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	SIRPG	Q9P1W8	387 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	MYO1A	Q9UBC5	1043 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	GULP1	Q9UBP9	304 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	CNOT8	Q9UFF9	292 aa	Known RBP	10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	SALL4	Q9UJQ4	1053 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	DOLK	Q9UPQ8	538 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	OR1A2	Q9Y585	309 aa		10.65	□□□□□ -0.7
HMGN1-215	ENST00000485550	CCDC187	A0A096LP49	1063 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	TTC24	A2A3L6	582 aa	Predicted RBP	10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	ARHGAP42	A6NI28	874 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	SMTNL1	A8MU46	457 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550		A8MX80	341 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	TPP1	O14773	563 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	PRPSAP2	O60256	369 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	NOBOX	O60393	691 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	RNF8	O76064	485 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	MBD3	O95983	291 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	PCCB	P05166	539 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	ITGA2B	P08514	1039 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	CTSE	P14091	401 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	PDX1	P52945	283 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	INPP5A	Q14642	412 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	FILIP1L	Q4L180	1135 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	ERAP2	Q6P179	960 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	MACC1	Q6ZN28	852 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	RFX8	Q6ZV50	586 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	SRL	Q86TD4	932 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	ARHGAP12	Q8IWW6	846 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	PLA2G15	Q8NCC3	412 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	ZNF653	Q96CK0	615 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	APOO	Q9BUR5	198 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	CINP	Q9BW66	212 aa	Predicted RBP	10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	SP110	Q9HB58	689 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	SEPT3	Q9UH03	358 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	LRP4	O75096	1905 aa		10.64	□□□□□ -0.71
HMGN1-215	ENST00000485550	TSPAN11	A1L157	253 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	LMO7DN	F2Z398	122 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	AGRP	O00253	132 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	DDX3X	O00571	662 aa	Known RBP eCLIP	10.63	□□□□□ -0.71	2e-15	■□□□□ 10.9
HMGN1-215	ENST00000485550	PPFIA2	O75334	1257 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	TCEA3	O75764	348 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ITGB2	P05107	769 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	HGF	P14210	728 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	HTR1B	P28222	390 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	HTR7	P34969	479 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	MLLT3	P42568	568 aa	Predicted RBP	10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	RPIA	P49247	311 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	SCNN1B	P51168	640 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	HK3	P52790	923 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	CYP4F2	P78329	520 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	BCL2L1	Q07817	233 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	KLHL30	Q0D2K2	578 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	SPIDR	Q14159	915 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	GRM3	Q14832	879 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	TBR1	Q16650	682 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ALG11	Q2TAA5	492 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	KCTD16	Q68DU8	428 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ESRP1	Q6NXG1	681 aa	Known RBP	10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	XKR5	Q6UX68	686 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	VASH2	Q86V25	355 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	PTRH1	Q86Y79	214 aa	Known RBP	10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	NPW	Q8N729	165 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	TPCN2	Q8NHX9	752 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	HCAR2	Q8TDS4	363 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	GLMN	Q92990	594 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	NSMCE3	Q96MG7	304 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ZNF641	Q96N77	438 aa	Predicted RBP	10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	BOC	Q9BWV1	1114 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ZWILCH	Q9H900	591 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	EPB41L5	Q9HCM4	733 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	DONSON	Q9NYP3	566 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	NCKIPSD	Q9NZQ3	722 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	CWC15	Q9P013	229 aa	Known RBP	10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	PADI4	Q9UM07	663 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	MYO6	Q9UM54	1294 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ATP8A1	Q9Y2Q0	1164 aa		10.63	□□□□□ -0.71
HMGN1-215	ENST00000485550	ANKRD36	A6QL64	1941 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	PLD2	O14939	933 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	LRCH4	O75427	683 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	RECQL5	O94762	991 aa	Predicted RBP	10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	GZMA	P12544	262 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	TCF4	P15884	667 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	CR2	P20023	1033 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	AMPD1	P23109	780 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	IL1R2	P27930	398 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SERPINA4	P29622	427 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	UGT1A5	P35504	534 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	MMP12	P39900	470 aa		10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 46 ms