RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CLIC5Q9NZA1 410 aa14.67□□□□□ -0.06
HDAC6-220ENST00000477528 SIRPGQ9P1W8 387 aa14.67□□□□□ -0.06
HDAC6-220ENST00000477528 SPASTQ9UBP0 616 aa14.67□□□□□ -0.06
HDAC6-220ENST00000477528 ARIH1Q9Y4X5 557 aaPredicted RBP14.67□□□□□ -0.06
HDAC6-220ENST00000477528 ACSL4O60488 711 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 MSH3P20585 1137 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 POLR2LP62875 67 aaKnown RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 GNA12Q03113 381 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 CRY1Q16526 586 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 NRF1Q16656 503 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 METTL3Q86U44 580 aaKnown RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 IFNL1Q8IU54 200 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 FIG4Q92562 907 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 RTP4Q96DX8 246 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 LINGO1Q96FE5 620 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SLC2A13Q96QE2 648 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 TRIM45Q9H8W5 580 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 ANAPC2Q9UJX6 822 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 CLOCKO15516 846 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SOX4Q06945 474 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 ZNF460Q14592 562 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 LDB1Q86U70 411 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 CEP19Q96LK0 163 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 UGT2B28Q9BY64 529 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 CIPCQ9C0C6 399 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 ATP13A3Q9H7F0 1226 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 ZNF556Q9HAH1 456 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 TMEM39AQ9NV64 488 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 PCDHB9Q9Y5E1 797 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SLC22A2O15244 555 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 HLA-DQB2P05538 268 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 BOP1Q14137 746 aaKnown RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 EML3Q32P44 896 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 FUT10Q6P4F1 479 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 CDYL2Q8N8U2 506 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 C19orf60Q96EN9 201 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SMOC2Q9H3U7 446 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 DLDP09622 509 aaKnown RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 LINC00032P0C843 101 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SNRPD1P62314 119 aaKnown RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SLC10A2Q12908 348 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 RAB6CQ53S08 254 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 TPGS1Q6ZTW0 290 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 RAB6CQ9H0N0 254 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 ZNF395Q9H8N7 513 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-220ENST00000477528 ARL15Q9NXU5 204 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 PGAP2Q9UHJ9 254 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 AP3M1Q9Y2T2 418 aa14.66□□□□□ -0.06
HDAC6-220ENST00000477528 SCAMP3O14828 347 aaKnown RBP14.65□□□□□ -0.06
HDAC6-220ENST00000477528 ANXA5P08758 320 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 PKMP14618 531 aaKnown RBP14.65□□□□□ -0.06
HDAC6-220ENST00000477528 UQCRBP14927 111 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CHRNA4P43681 627 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CDH4P55283 916 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CCL23P55773 120 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 RALGPS1Q5JS13 557 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 LYPLAL1Q5VWZ2 237 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 TBC1D19Q8N5T2 526 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 TMEM106CQ9BVX2 250 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 MKS1Q9NXB0 559 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CCNFP41002 786 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 SLC7A2P52569 658 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 FOLH1Q04609 750 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CYS1Q717R9 158 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 ADCK2Q7Z695 626 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 ARFGAP1Q8N6T3 406 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 PPP3R2Q96LZ3 170 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 GABRDO14764 452 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CA12O43570 354 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CYP2A6P11509 494 aaPredicted RBP14.65□□□□□ -0.06
HDAC6-220ENST00000477528 RAD23AP54725 363 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 ACTR3P61158 418 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 PRKG2Q13237 762 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 CRHR2Q13324 411 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 LPCAT4Q643R3 524 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 MBLAC2Q68D91 279 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 ZNF557Q8N988 423 aaPredicted RBP14.65□□□□□ -0.06
HDAC6-220ENST00000477528 ITFG1Q8TB96 612 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 KBTBD7Q8WVZ9 684 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 HOPXQ9BPY8 73 aaPredicted RBP14.65□□□□□ -0.06
HDAC6-220ENST00000477528 EBF2Q9HAK2 575 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 KLQ9UEF7 1012 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 TRIM17Q9Y577 477 aa14.65□□□□□ -0.06
HDAC6-220ENST00000477528 C1orf232A0A0U1RR37 186 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 RBM47A0AV96 593 aaKnown RBP14.64□□□□□ -0.07
HDAC6-220ENST00000477528 MGAT4DA6NG13 374 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 A8MX80 341 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 CCL22O00626 93 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 LZTS3O60299 673 aaPredicted RBP14.64□□□□□ -0.07
HDAC6-220ENST00000477528 OTCP00480 354 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 FGFR3P22607 806 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 CORO1AP31146 461 aaKnown RBP14.64□□□□□ -0.07
HDAC6-220ENST00000477528 BLMHQ13867 455 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 ZC3HC1Q86WB0 502 aaKnown RBP14.64□□□□□ -0.07
HDAC6-220ENST00000477528 TMEM130Q8N3G9 435 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 DHRSXQ8N5I4 330 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 SMG8Q8ND04 991 aaKnown RBP14.64□□□□□ -0.07
HDAC6-220ENST00000477528 TMEM159Q96B96 161 aa14.64□□□□□ -0.07
HDAC6-220ENST00000477528 SENP6Q9GZR1 1112 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms