RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TBC1D3HP0C7X1 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SRCP12931 536 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 ATP1A3P13637 1013 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 FERP16591 822 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 GPD1P21695 349 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 RRM1P23921 792 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CHRNA3P32297 505 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 ADRA1BP35368 520 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 NUDT1P36639 197 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 ETFBP38117 255 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 RECQLP46063 649 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 MAPKAPK2P49137 400 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CCT8P50990 548 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 METAP1P53582 386 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM193AP78312 1265 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TEKQ02763 1124 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 GNA12Q03113 381 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC20A2Q08357 652 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CCDC15Q0P6D6 951 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 ST3GAL2Q16842 350 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 INAVAQ3KP66 663 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 POM121L1PQ3SYA9 428 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 FILIP1LQ4L180 1135 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC45A4Q5BKX6 768 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 AGBL4Q5VU57 503 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3GQ6DHY5 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3CQ6IPX1 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 RWDD4Q6NW29 188 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 PPP1R2P3Q6NXS1 205 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CAVIN1Q6NZI2 390 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 DNAJC24Q6P3W2 148 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 C22orf39Q6P5X5 142 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 LAYNQ6UX15 382 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 LINGO4Q6UY18 593 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 MON1BQ7L1V2 547 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 GLRX5Q86SX6 157 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 PRPF39Q86UA1 669 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TRIM69Q86WT6 500 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 DRC7Q8IY82 874 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3Q8IZP1 549 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TMIEQ8NEW7 156 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 OR7D4Q8NG98 312 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 OR2A12Q8NGT7 310 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 JOSD2Q8TAC2 188 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 FBF1Q8TES7 1133 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SETD7Q8WTS6 366 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM172AQ8WUF8 416 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CENPIQ92674 756 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D31Q96DN5 1066 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SERAC1Q96JX3 654 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC6A18Q96N87 628 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CDC6Q99741 560 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SPON2Q9BUD6 331 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SCNM1Q9BWG6 230 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 OSBPL2Q9H1P3 480 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 PREBQ9HCU5 417 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 DYRK4Q9NR20 520 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF212Q9UDV6 495 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SARDHQ9UL12 918 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 MYO6Q9UM54 1294 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 APOBEC2Q9Y235 224 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 NEUROG3Q9Y4Z2 214 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 FRYQ5TBA9 3013 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 COL5A1P20908 1838 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PLXNB3Q9ULL4 1909 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CXorf51AA0A1B0GTR3 108 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 TCRBV5S1A1TA0A578 114 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 H0Y8X5 98 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 K7ERQ8 282 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PLK4O00444 970 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 KPNA3O00505 521 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 YKT6O15498 198 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PCDHGA12O60330 932 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CBFA2T3O75081 653 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 GJB6O95452 261 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CTSLP07711 333 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PLEKP08567 350 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 FTH1P19P0C7X4 201 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 TNFAIP3P21580 790 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CD38P28907 300 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 RFC1P35251 1148 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CTSKP43235 329 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 GRK6P43250 576 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF165P49910 485 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 SERPINH1P50454 418 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF143P52747 638 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 AIF1P55008 147 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 HDAC4P56524 1084 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 GEMIN4P57678 1058 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PPP2CBP62714 309 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 PPP2CAP67775 309 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CHRNEQ04844 493 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 SCAPQ12770 1279 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 CNTN1Q12860 1018 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 RAB6CQ53S08 254 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 KCNT1Q5JUK3 1230 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 MANEALQ5VSG8 457 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 NAPEPLDQ6IQ20 393 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 ACAD10Q6JQN1 1059 aa6.92□□□□□ -1.3
CCDC88A-213ENST00000476903 UNQ6494/PRO21346Q6UXR6 183 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms