RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZGRF1Q86YA3 2104 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 PRSS38A1L453 326 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 A8MU76 341 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 FOXO6A8MYZ6 492 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 MASP2O00187 686 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 ZNF185O15231 689 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 MMP20O60882 483 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 MT-CO1P00395 513 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 HLA-DRAP01903 254 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 FGF1P05230 155 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 XPAP23025 273 aaPredicted RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 ERCC5P28715 1186 aaPredicted RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 TSFMP43897 325 aaKnown RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 NUMBP49757 651 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 VAV2P52735 878 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 CASP6P55212 293 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 ANAPC15P60006 121 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 YBX1P67809 324 aaKnown RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 RAD51Q06609 339 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 POLD3Q15054 466 aaPredicted RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 LONRF1Q17RB8 773 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 WSCD2Q2TBF2 565 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 ACBD5Q5T8D3 534 aaPredicted RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 RRAGBQ5VZM2 374 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 SPOPLQ6IQ16 392 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 FOXR2Q6PJQ5 311 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 FAM180AQ6UWF9 173 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 ZNF783Q6ZMS7 281 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 TAC4Q86UU9 113 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 PRIMA1Q86XR5 153 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 TMC2Q8TDI7 906 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 MTFMTQ96DP5 389 aaKnown RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 CCDC120Q96HB5 630 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 IP6K3Q96PC2 410 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 TRAPPC9Q96Q05 1148 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 PRMT1Q99873 361 aaKnown RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.05□□□□□ -1.12
USP54-211ENST00000474929 FGF21Q9NSA1 209 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 SERTAD1Q9UHV2 236 aa8.05□□□□□ -1.12
USP54-211ENST00000474929 PRRC2AP48634 2157 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 K7ERQ8 282 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 THAP12O43422 761 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 SMAD6O43541 496 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 PCCBP05166 539 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 HEXAP06865 529 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 FGF5P12034 268 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 LCP1P13796 627 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 ZNF28P17035 718 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 ADSLP30566 484 aaPredicted RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 CCR1P32246 355 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 ETFBP38117 255 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 PBX1P40424 430 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 CASP4P49662 377 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 DNA2P51530 1060 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 YWHAEP62258 255 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 SNRPD1P62314 119 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 OTUD4Q01804 1114 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 IL10RAQ13651 578 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 DSG2Q14126 1118 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 KYNUQ16719 465 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 DCAF10Q5QP82 559 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 FBXL22Q6P050 247 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 ZNF517Q6ZMY9 492 aaPredicted RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 CCDC73Q6ZRK6 1079 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 TTC7BQ86TV6 843 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 BPHLQ86WA6 291 aaPredicted RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 RAB43Q86YS6 212 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 SFTPA2Q8IWL1 248 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 NAGSQ8N159 534 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 ARFGAP1Q8N6T3 406 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 BCORP1Q8N888 145 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 SLC4A11Q8NBS3 891 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 CLEC1AQ8NC01 280 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 ZNF507Q8TCN5 953 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 PPP4R1Q8TF05 950 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 FAM149B1Q96BN6 582 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 SLX1AQ9BQ83 275 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 WDR77Q9BQA1 342 aaPredicted RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 FGFBP2Q9BYJ0 223 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 WDR26Q9H7D7 661 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 CARS2Q9HA77 564 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 SLC24A3Q9HC58 644 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 PDE7BQ9NP56 450 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 SPATS2LQ9NUQ6 558 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 HECAQ9UBI9 543 aaPredicted RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 XPO7Q9UIA9 1087 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 MOSPD1Q9UJG1 213 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 SNX7Q9UNH6 387 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 FARSAQ9Y285 508 aaKnown RBP8.04□□□□□ -1.12
USP54-211ENST00000474929 NTNG1Q9Y2I2 539 aa8.04□□□□□ -1.12
USP54-211ENST00000474929 TMEM202A6NGA9 273 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 A6NL46 340 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 F5H423 210 aaPredicted RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 PPM1DO15297 605 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 TGFB1I1O43294 461 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 SNAP91O60641 907 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 JRKO75564 520 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 SPAG6O75602 509 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 CLDN14O95500 239 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 POP4O95707 220 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms