RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 HES3Q5TGS1 186 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 B4GALNT4Q76KP1 1039 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 ZC3H18Q86VM9 953 aaKnown RBP17.84■□□□□ 0.45
COL7A1-205ENST00000465238 PGBD5Q8N414 524 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 TTC13Q8NBP0 860 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 ZNF641Q96N77 438 aaPredicted RBP17.84■□□□□ 0.45
COL7A1-205ENST00000465238 NUDCD1Q96RS6 583 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 MYOCQ99972 504 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 MGME1Q9BQP7 344 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 SUV39H2Q9H5I1 410 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 SEPT10Q9P0V9 454 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 TTLL3Q9Y4R7 772 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.84■□□□□ 0.45
COL7A1-205ENST00000465238 LOC400499M0QZD8 3231 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 HACD1B0YJ81 288 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 H7C0C1 242 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 MTSS1O43312 755 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 PIGNO95427 931 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 CES1P23141 567 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 ACP1P24666 158 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 ATP5OP48047 213 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 CLDN6P56747 220 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 IFI35P80217 286 aaPredicted RBP17.83■□□□□ 0.44
COL7A1-205ENST00000465238 OTUD4Q01804 1114 aaKnown RBP17.83■□□□□ 0.44
COL7A1-205ENST00000465238 TARDBPQ13148 414 aaKnown RBP eCLIP17.83■□□□□ 0.44
COL7A1-205ENST00000465238 XRCC4Q13426 336 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 NOMO1Q15155 1222 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 TMEM259Q4ZIN3 620 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 HS1BP3Q53T59 392 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 KIAA1161Q6NSJ0 714 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 ABI3BPQ7Z7G0 1075 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 CAMK1DQ8IU85 385 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 CACTIN-AS1Q8N1I8 211 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 SLC25A45Q8N413 288 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 OR13H1Q8NG92 308 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 ACTL9Q8TC94 416 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 IFT43Q96FT9 208 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 IL12RB2Q99665 862 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 TLR10Q9BXR5 811 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 POLR1EQ9GZS1 481 aaKnown RBP17.83■□□□□ 0.44
COL7A1-205ENST00000465238 CARD9Q9H257 536 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 FZD3Q9NPG1 666 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 ZFR2Q9UPR6 939 aaKnown RBP17.83■□□□□ 0.44
COL7A1-205ENST00000465238 JRKLQ9Y4A0 524 aa17.83■□□□□ 0.44
COL7A1-205ENST00000465238 TTC24A2A3L6 582 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 TRIM38O00635 465 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 SIGLEC6O43699 453 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 ADRB3P13945 408 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 CR2P20023 1033 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 XPAP23025 273 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 DGKAP23743 735 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 EIF3EP60228 445 aaKnown RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 RPS21P63220 83 aaKnown RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 PRKD1Q15139 912 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 SEL1L3Q68CR1 1132 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 GCNT7Q6ZNI0 430 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 PARS2Q7L3T8 475 aaKnown RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 TTC7BQ86TV6 843 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 ZSCAN30Q86W11 494 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 DCP2Q8IU60 420 aaKnown RBP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.82■□□□□ 0.44
COL7A1-205ENST00000465238 OR4C6Q8NH72 309 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 HCAR2Q8TDS4 363 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 FEM1CQ96JP0 617 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 SEMA3CQ99985 751 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 FERMT1Q9BQL6 677 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 NRSN2Q9GZP1 204 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 NOD2Q9HC29 1040 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 DKK3Q9UBP4 350 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 ATP8A1Q9Y2Q0 1164 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 HS3ST3A1Q9Y663 406 aa17.82■□□□□ 0.44
COL7A1-205ENST00000465238 USP27XA6NNY8 438 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 A6NNZ2 444 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 AP1G1O43747 822 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 HLA-DQB2P05538 268 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 CLDN2P57739 230 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 E2F1Q01094 437 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 ZBTB17Q13105 803 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 COL9A2Q14055 689 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-205ENST00000465238 RTP5Q14D33 572 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 BRAT1Q6PJG6 821 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 CDKL3Q8IVW4 592 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-205ENST00000465238 SLC35F6Q8N357 371 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 HTR3CQ8WXA8 447 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 RAB7BQ96AH8 199 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 VOPP1Q96AW1 172 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 QKIQ96PU8 341 aaKnown RBP eCLIP17.81■□□□□ 0.44
COL7A1-205ENST00000465238 SLC17A9Q9BYT1 436 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 FADS3Q9Y5Q0 445 aa17.81■□□□□ 0.44
COL7A1-205ENST00000465238 ASXL3Q9C0F0 2248 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 NEMP1O14524 444 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 PIAS2O75928 621 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 ALPPL2P10696 532 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 RBP3P10745 1247 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 POLR2LP62875 67 aaKnown RBP17.8■□□□□ 0.44
COL7A1-205ENST00000465238 DAB2P98082 770 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 DSC2Q02487 901 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 KLF1Q13351 362 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-205ENST00000465238 TEX44Q53QW1 395 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 DARS2Q6PI48 645 aaKnown RBP17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms