RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 LRRN4Q8WUT4 740 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 PIH1D2Q8WWB5 315 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 COQ10AQ96MF6 247 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 MCCC1Q96RQ3 725 aaPredicted RBP23.05■■□□□ 1.28
PTPN4-208ENST00000460289 IL12RB2Q99665 862 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 CAAP1Q9H8G2 361 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 NCKIPSDQ9NZQ3 722 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.05■■□□□ 1.28
PTPN4-208ENST00000460289 OR1A2Q9Y585 309 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 TDRD6O60522 2096 aaKnown RBP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 SOWAHDA6NJG2 315 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 PSMD11O00231 422 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 PPP1R12AO14974 1030 aaPredicted RBP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 HEXIM1O94992 359 aaKnown RBP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 HLA-DQB2P05538 268 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 HOXC4P09017 264 aaPredicted RBP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 CKMT1AP12532 417 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 HNF1BP35680 557 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 EPHB1P54762 984 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 E2F1Q01094 437 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 AP1B1Q10567 949 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 CNGA3Q16281 694 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 C11orf63Q6NUN7 778 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 ZCCHC8Q6NZY4 707 aaKnown RBP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 ENPP7Q6UWV6 458 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 MFSD7Q6UXD7 560 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 CBARPQ8N350 705 aaPredicted RBP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.04■■□□□ 1.28
PTPN4-208ENST00000460289 PLA2G15Q8NCC3 412 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 ARRDC2Q8TBH0 407 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 APOLD1Q96LR9 279 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 SALL4Q9UJQ4 1053 aa23.04■■□□□ 1.28
PTPN4-208ENST00000460289 KCNK1O00180 336 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 CACNB4O00305 520 aaPredicted RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 ZRANB2O95218 330 aaKnown RBP eCLIP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 RASGRP1O95267 797 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 PDHA1P08559 390 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 GM2AP17900 193 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 KELP23276 732 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 TRIM23P36406 574 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 CDKN2BP42772 138 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 NR2C2P49116 596 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 HK3P52790 923 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 IFI35P80217 286 aaPredicted RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 ESRP1Q6NXG1 681 aaKnown RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 PNCKQ6P2M8 343 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 RCOR2Q8IZ40 523 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 RBFAQ8N0V3 343 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 FSTL5Q8N475 847 aaPredicted RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 NUS1Q96E22 293 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 WDR92Q96MX6 357 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 TDRD1Q9BXT4 1180 aaKnown RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 TCEAL2Q9H3H9 227 aaPredicted RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 PNMA8BQ9ULN7 279 aaPredicted RBP23.03■■□□□ 1.28
PTPN4-208ENST00000460289 TFR2Q9UP52 801 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 EPG5Q9HCE0 2579 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 LRRK1Q38SD2 2015 aa23.03■■□□□ 1.28
PTPN4-208ENST00000460289 SPEGQ15772 3267 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 A0A0J9YYE9 177 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 NPIPB15A6NHN6 443 aaPredicted RBP23.02■■□□□ 1.28
PTPN4-208ENST00000460289 PDE2AO00408 941 aaPredicted RBP23.02■■□□□ 1.28
PTPN4-208ENST00000460289 TRBC1P01850 177 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 CTSEP14091 401 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 JUPP14923 745 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 CTPS1P17812 591 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 KIAA1024LP59773 190 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 SRP54P61011 504 aaKnown RBP23.02■■□□□ 1.28
PTPN4-208ENST00000460289 RPL26P61254 145 aaKnown RBP23.02■■□□□ 1.28
PTPN4-208ENST00000460289 DYNLT1P63172 113 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 ELOCQ15369 112 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 TAZQ16635 292 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 DENND2CQ68D51 928 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 DAAM2Q86T65 1068 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 HID1Q8IV36 788 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 KATNAL2Q8IYT4 538 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 SDR16C5Q8N3Y7 309 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 OLFM3Q96PB7 478 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 LRRC61Q9BV99 259 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 IMPACTQ9P2X3 320 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 KLQ9UEF7 1012 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 DNPEPQ9ULA0 475 aa23.02■■□□□ 1.28
PTPN4-208ENST00000460289 RPL26L1Q9UNX3 145 aaKnown RBP23.02■■□□□ 1.28
PTPN4-208ENST00000460289 MAP1BP46821 2468 aaKnown RBP23.02■■□□□ 1.28
PTPN4-208ENST00000460289 AKAP13Q12802 2813 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 LMO7DNF2Z398 122 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 GCATO75600 419 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 ANXA6P08133 673 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 ALPIP09923 528 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 TSHRP16473 764 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 LHCGRP22888 699 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 NAP1L1P55209 391 aaKnown RBP23.01■■□□□ 1.27
PTPN4-208ENST00000460289 NIPAL4Q0D2K0 466 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 C1orf61Q13536 156 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 ALG11Q2TAA5 492 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 DEFB133Q30KQ1 61 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 TFDP3Q5H9I0 405 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 NPNTQ6UXI9 565 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 SPOCD1Q6ZMY3 1216 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 RD3Q7Z3Z2 195 aa23.01■■□□□ 1.27
PTPN4-208ENST00000460289 SCG3Q8WXD2 468 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms