RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ZNF135P52742 658 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 CDH6P55285 790 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 E2F1Q01094 437 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 TARDBPQ13148 414 aaKnown RBP eCLIP18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 PTK2BQ14289 1009 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 KRT81Q14533 505 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 ATP13A4Q4VNC1 1196 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 MFSD7Q6UXD7 560 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 KCTD6Q8NC69 237 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 DUSP23Q9BVJ7 150 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 CINPQ9BW66 212 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 CAAP1Q9H8G2 361 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 PDFQ9HBH1 243 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 PCDH18Q9HCL0 1135 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 EVA1BQ9NVM1 165 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 DKK4Q9UBT3 224 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 TDRD6O60522 2096 aaKnown RBP18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 NEBLO76041 1014 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 JUNDP17535 347 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 PFN3P60673 137 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 DPYSL3Q14195 570 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 LONRF2Q1L5Z9 754 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 AADACL2Q6P093 401 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 ERAP2Q6P179 960 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 ZNF548Q8NEK5 533 aaPredicted RBP18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 HCAR2Q8TDS4 363 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 RNF25Q96BH1 459 aaPredicted RBP18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 CENPTQ96BT3 561 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 FAF2Q96CS3 445 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 NXPE2Q96DL1 559 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 ZNF641Q96N77 438 aaPredicted RBP18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 SMARCAL1Q9NZC9 954 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 LHX6Q9UPM6 363 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 AK5Q9Y6K8 562 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 ACACAQ13085 2346 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 FAM208BQ5VWN6 2430 aa18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 DSPP15924 2871 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-204ENST00000453046 CCDC188H7C350 402 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 K7ESM1 405 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 CKMT1AP12532 417 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 ARL4AP40617 200 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 HCAR3P49019 387 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 DUSP3P51452 185 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 KLF1Q13351 362 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 UGP2Q16851 508 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 BRAT1Q6PJG6 821 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 C19orf48Q6RUI8 117 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 KDM7AQ6ZMT4 941 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 SRLQ86TD4 932 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 CAMK1DQ8IU85 385 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 LZTR1Q8N653 840 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 TSEN2Q8NCE0 465 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 SPATA4Q8NEY3 305 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 LMX1AQ8TE12 382 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 BTN2A2Q8WVV5 523 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 APOLD1Q96LR9 279 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 TUBGCP5Q96RT8 1024 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 ATP13A3Q9H7F0 1226 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 CWC15Q9P013 229 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 CLCA2Q9UQC9 943 aa18.12■□□□□ 0.49
SQSTM1-204ENST00000453046 APC2O95996 2303 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 LAMA5O15230 3695 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 H3BRJ5 948 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 TOR1BO14657 336 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 AQP9O43315 295 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 TJP3O95049 919 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 GIMD1P0DJR0 217 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 SERPINA4P29622 427 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 IGFALSP35858 605 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 YPEL5P62699 121 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 INSM1Q01101 510 aaPredicted RBP18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 IL10RBQ08334 325 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 RFTN1Q14699 578 aaPredicted RBP18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 TMEM52BQ4KMG9 183 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 TPRG1LQ5T0D9 272 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 ARHGAP12Q8IWW6 846 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 IL12RB2Q99665 862 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 PCDH12Q9NPG4 1184 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 MBNL1Q9NR56 388 aaKnown RBP18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 SPASTQ9UBP0 616 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 APOBEC3BQ9UH17 382 aaKnown RBP18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 COQ6Q9Y2Z9 468 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 GPSM3Q9Y4H4 160 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 CSNK1G3Q9Y6M4 447 aa18.11■□□□□ 0.49
SQSTM1-204ENST00000453046 LZTS3O60299 673 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 CD48P09326 243 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 MYF5P13349 255 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 RGRP47804 291 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 CSNK1DP48730 415 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 TUBB4BP68371 445 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 BCL2L1Q07817 233 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 EIF2B5Q13144 721 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 TFDP2Q14188 446 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 LRRC14Q15048 493 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 FAXCQ5TGI0 409 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 AFMIDQ63HM1 303 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 ZCCHC8Q6NZY4 707 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 ARHGAP36Q6ZRI8 547 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 BBS12Q6ZW61 710 aa18.1■□□□□ 0.49
SQSTM1-204ENST00000453046 NPWQ8N729 165 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms