RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PTPRRQ15256 657 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 TRADDQ15628 312 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 ZNF534Q76KX8 674 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 CAND1Q86VP6 1230 aaKnown RBP15.82■□□□□ 0.12
USP40-206ENST00000443711 CXorf40AQ8TE69 158 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 UBXN4Q92575 508 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 SERPINB12Q96P63 405 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 LRFN3Q9BTN0 628 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 GPR63Q9BZJ6 419 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 FAM129AQ9BZQ8 928 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 PIH1D1Q9NWS0 290 aaKnown RBP15.82■□□□□ 0.12
USP40-206ENST00000443711 GGT7Q9UJ14 662 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 INVSQ9Y283 1065 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 ZNF711Q9Y462 761 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 SPO11Q9Y5K1 396 aa15.82■□□□□ 0.12
USP40-206ENST00000443711 C1orf232A0A0U1RR37 186 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 FAM47DPA6NHR8 397 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 TP73O15350 636 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 MAP3K13O43283 966 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 RNGTTO60942 597 aaKnown RBP15.81■□□□□ 0.12
USP40-206ENST00000443711 PPFIA2O75334 1257 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 CRTAMO95727 393 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 ELFN1P0C7U0 828 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 SP9P0CG40 484 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 LIG3P49916 1009 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 SESN2P58004 480 aaPredicted RBP15.81■□□□□ 0.12
USP40-206ENST00000443711 RALGDSQ12967 914 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 MSLNQ13421 630 aaPredicted RBP15.81■□□□□ 0.12
USP40-206ENST00000443711 LAMB3Q13751 1172 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 CDKN3Q16667 212 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 LRRK1Q38SD2 2015 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 CERCAMQ5T4B2 595 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 KIAA1161Q6NSJ0 714 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 LIPIQ6XZB0 460 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 LYSMD3Q7Z3D4 306 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 GLT6D1Q7Z4J2 308 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 PDIK1LQ8N165 341 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 FAM160A2Q8N612 972 aaPredicted RBP15.81■□□□□ 0.12
USP40-206ENST00000443711 BRSK1Q8TDC3 778 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 IFT81Q8WYA0 676 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 NELL1Q92832 810 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 WRAP53Q9BUR4 548 aaKnown RBP15.81■□□□□ 0.12
USP40-206ENST00000443711 GPR174Q9BXC1 333 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 IL22Q9GZX6 179 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 PCED1AQ9H1Q7 454 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 ZFYVE1Q9HBF4 777 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 GDF3Q9NR23 364 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 ZSCAN32Q9NX65 697 aa15.81■□□□□ 0.12
USP40-206ENST00000443711 ZNF318Q5VUA4 2279 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 CEP192Q8TEP8 1941 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 PRR23AA6NEV1 266 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 SDR42E2A6NKP2 422 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 C2orf81A6NN90 581 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 PSMD11O00231 422 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 MMP20O60882 483 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 AVILO75366 819 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 CLDN7O95471 211 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 LHCGRP22888 699 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 ADRA1DP25100 572 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 MGAT1P26572 445 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 CNR2P34972 360 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 ARL4CP56559 192 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 RPS21P63220 83 aaKnown RBP15.8■□□□□ 0.12
USP40-206ENST00000443711 PDE1BQ01064 536 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 CUL1Q13616 776 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 POU6F1Q14863 301 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 TAF1AQ15573 450 aaPredicted RBP15.8■□□□□ 0.12
USP40-206ENST00000443711 CNGA3Q16281 694 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 DNAJC21Q5F1R6 531 aaKnown RBP15.8■□□□□ 0.12
USP40-206ENST00000443711 ARMC3Q5W041 872 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 LRRC66Q68CR7 880 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 TMC3Q7Z5M5 1100 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 TSPAN33Q86UF1 283 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 C11orf74Q86VG3 221 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 HORMAD1Q86X24 394 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 TTC30BQ8N4P2 665 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 ZCCHC9Q8N567 271 aaKnown RBP15.8■□□□□ 0.12
USP40-206ENST00000443711 FRMD1Q8N878 549 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 FBXO25Q8TCJ0 367 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 GAB3Q8WWW8 586 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 RANBP9Q96S59 729 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 FOXP3Q9BZS1 431 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP40-206ENST00000443711 MBD1Q9UIS9 605 aaPredicted RBP15.8■□□□□ 0.12
USP40-206ENST00000443711 MYLKQ15746 1914 aa15.8■□□□□ 0.12
USP40-206ENST00000443711 DOCK9Q9BZ29 2069 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 A0A0U1RQS6 177 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 A0A1W2PQU0 124 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 HEATR9A2RTY3 570 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 LZTS3O60299 673 aaPredicted RBP15.79■□□□□ 0.12
USP40-206ENST00000443711 RPP40O75818 363 aaKnown RBP15.79■□□□□ 0.12
USP40-206ENST00000443711 LPOP22079 712 aaPredicted RBP15.79■□□□□ 0.12
USP40-206ENST00000443711 HMGCLP35914 325 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 MAGEA3P43357 314 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 CCR5P51681 352 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 STC1P52823 247 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 PTSQ03393 145 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 SGCGQ13326 291 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 SEPT6Q14141 434 aa15.79■□□□□ 0.12
USP40-206ENST00000443711 HLTFQ14527 1009 aaKnown RBP eCLIP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms