RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 PCDH9Q9HC56 1237 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 SEPT10Q9P0V9 454 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 RPL26L1Q9UNX3 145 aaKnown RBP10.5□□□□□ -0.73
MCF2L-216ENST00000439475 DOLKQ9UPQ8 538 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 CHKBQ9Y259 395 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 EFR3BQ9Y2G0 817 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 MSRB2Q9Y3D2 182 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 NEUROG3Q9Y4Z2 214 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 PCDHA3Q9Y5H8 950 aa10.5□□□□□ -0.73
MCF2L-216ENST00000439475 CFAP54Q96N23 3096 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 HACD1B0YJ81 288 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 TPP1O14773 563 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 HYAL3O43820 417 aaPredicted RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 FZD6O60353 706 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 ZNF189O75820 626 aaPredicted RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 HEXIM1O94992 359 aaKnown RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 RASGRP1O95267 797 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 PTMAP06454 111 aaKnown RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 PYGLP06737 847 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 HOXC4P09017 264 aaPredicted RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 TSHRP16473 764 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 CTPS1P17812 591 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 CTNNA2P26232 953 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 CTNNA1P35221 906 aaKnown RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 E2F1Q01094 437 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 NFATC4Q14934 902 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 TAZQ16635 292 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 CCDC157Q569K6 752 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 DENND2CQ68D51 928 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 NPNTQ6UXI9 565 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 KANSL1Q7Z3B3 1105 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 PEX26Q7Z412 305 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 RAB44Q7Z6P3 723 aaPredicted RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 SLCO6A1Q86UG4 719 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 PHACTR4Q8IZ21 702 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 SDR16C5Q8N3Y7 309 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 SLC25A45Q8N413 288 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 UBL4BQ8N7F7 174 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 PNPLA1Q8N8W4 532 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 CCDC112Q8NEF3 446 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 OR4C6Q8NH72 309 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 ARRDC2Q8TBH0 407 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 CCHCR1Q8TD31 782 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 LMX1AQ8TE12 382 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 PIH1D2Q8WWB5 315 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 NUS1Q96E22 293 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 NSMCE3Q96MG7 304 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 WDR92Q96MX6 357 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 AGAP3Q96P47 875 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 OLFM3Q96PB7 478 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 SRPK1Q96SB4 655 aaKnown RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 VAT1Q99536 393 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 MLPHQ9BV36 600 aaPredicted RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 TDRD1Q9BXT4 1180 aaKnown RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 GOLPH3Q9H4A6 298 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 USP29Q9HBJ7 922 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 NLGN3Q9NZ94 848 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 NCKIPSDQ9NZQ3 722 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 APOBEC3BQ9UH17 382 aaKnown RBP10.49□□□□□ -0.73
MCF2L-216ENST00000439475 SALL4Q9UJQ4 1053 aa10.49□□□□□ -0.73
MCF2L-216ENST00000439475 LRRK1Q38SD2 2015 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 hCG_1818297A0A087WSY0 165 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 A0A0J9YYE9 177 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 FAM221BA6H8Z2 402 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 RCCD1A6NED2 376 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 GOLGA6L9A6NEM1 432 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 MIF4GDA9UHW6 222 aaKnown RBP10.48□□□□□ -0.73
MCF2L-216ENST00000439475 ANKRD66B4E2M5 251 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 FFAR2O15552 330 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 AQP9O43315 295 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 SIGLEC6O43699 453 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 KRT86O43790 486 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 RFPL3O75679 317 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 TJP3O95049 919 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 TRBC1P01850 177 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 ANXA6P08133 673 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 PDHA1P08559 390 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 ALPIP09923 528 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 HNF1BP35680 557 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 CD86P42081 329 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 GPR1P46091 355 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 RPIAP49247 311 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 NIPAL4Q0D2K0 466 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 EIF2B5Q13144 721 aaKnown RBP10.48□□□□□ -0.73
MCF2L-216ENST00000439475 XRCC4Q13426 336 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 LLGL1Q15334 1064 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 ELOCQ15369 112 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 CNGA3Q16281 694 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 PRRT3Q5FWE3 981 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 ESRP1Q6NXG1 681 aaKnown RBP10.48□□□□□ -0.73
MCF2L-216ENST00000439475 PNCKQ6P2M8 343 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 BBS12Q6ZW61 710 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 TMPRSS7Q7RTY8 843 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 PID1Q7Z2X4 250 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 RD3Q7Z3Z2 195 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 NLRP8Q86W28 1048 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 HID1Q8IV36 788 aa10.48□□□□□ -0.73
MCF2L-216ENST00000439475 FSTL5Q8N475 847 aaPredicted RBP10.48□□□□□ -0.73
MCF2L-216ENST00000439475 RNF10Q8N5U6 811 aaKnown RBP10.48□□□□□ -0.73
MCF2L-216ENST00000439475 FAM181AQ8N9Y4 354 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms