RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 IGF2-ASQ6U949 168 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 ENPP7Q6UWV6 458 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 MON1BQ7L1V2 547 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 UMODL1-AS1Q8N2C9 162 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 PYROXD2Q8N2H3 581 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 SDR16C5Q8N3Y7 309 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 KYQ8NBH2 561 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 OR6C4Q8NGE1 309 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 CCDC74AQ96AQ1 378 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 CENPTQ96BT3 561 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 WDR92Q96MX6 357 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 ZNF641Q96N77 438 aaPredicted RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 GBP4Q96PP9 640 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 TUBGCP5Q96RT8 1024 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 EIF3CQ99613 913 aaKnown RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 AGPAT1Q99943 283 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 CINPQ9BW66 212 aaPredicted RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 BOCQ9BWV1 1114 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 CPEB1Q9BZB8 566 aaKnown RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 TCEAL2Q9H3H9 227 aaPredicted RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 DHX35Q9H5Z1 703 aaKnown RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 CAAP1Q9H8G2 361 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 PCDH12Q9NPG4 1184 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 ASCL3Q9NQ33 180 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 FANCLQ9NW38 375 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 AKAP7Q9P0M2 348 aaPredicted RBP7.82□□□□□ -1.16
VPS50-204ENST00000438395 LHX3Q9UBR4 397 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 KLF15Q9UIH9 416 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 MOSPD1Q9UJG1 213 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 NEU3Q9UQ49 428 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 ATP8A1Q9Y2Q0 1164 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 PCDHGA8Q9Y5G5 932 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 MYO18BQ8IUG5 2567 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 AHCTF1Q8WYP5 2266 aa7.82□□□□□ -1.16
VPS50-204ENST00000438395 BPTFQ12830 3046 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TRPM6Q9BX84 2022 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ASH1LQ9NR48 2969 aaKnown RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 D6RAR5 112 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 DFFAO00273 331 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PDE2AO00408 941 aaPredicted RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 PLD2O14939 933 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ZW10O43264 779 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PRPSAP2O60256 369 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PRAMEF11O60813 436 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PALMO75781 387 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 RNF8O76064 485 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TNFP01375 233 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 RPLP0P05388 317 aaKnown RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 ELFN1P0C7U0 828 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 JMJD7P0C870 316 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 UNGP13051 313 aaPredicted RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 PSMA2P25787 234 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 MMP12P39900 470 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 GSK3AP49840 483 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 LIG3P49916 1009 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 NDST2P52849 883 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 POLR2LP62875 67 aaKnown RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 BCL2L1Q07817 233 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PTP4A2Q12974 167 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 MTM1Q13496 603 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ARHGEF7Q14155 803 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 INPP5AQ14642 412 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 UGP2Q16851 508 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ALG11Q2TAA5 492 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 WSCD2Q2TBF2 565 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ZSCAN23Q3MJ62 389 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TMEM52BQ4KMG9 183 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PPP6R3Q5H9R7 873 aaPredicted RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 PERM1Q5SV97 790 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 CCDC81Q6ZN84 652 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TAF8Q7Z7C8 310 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 FBXO39Q8N4B4 442 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TP53I13Q8NBR0 393 aaPredicted RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 NETO2Q8NC67 525 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 HCAR2Q8TDS4 363 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TSACCQ96A04 125 aaPredicted RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 WBP1Q96G27 269 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 CELF6Q96J87 481 aaKnown RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 TMEM74Q96NL1 305 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 SLC46A1Q96NT5 459 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 PCDHB18PQ96TA0 734 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 EDEM3Q9BZQ6 932 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ZMYND15Q9H091 742 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 NAT10Q9H0A0 1025 aaKnown RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 SUV39H2Q9H5I1 410 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 WDR26Q9H7D7 661 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 MBNL1Q9NR56 388 aaKnown RBP7.81□□□□□ -1.16
VPS50-204ENST00000438395 PARVAQ9NVD7 372 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 FZD10Q9ULW2 581 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 AP4E1Q9UPM8 1137 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 SIK3Q9Y2K2 1263 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 COQ6Q9Y2Z9 468 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 OR1A2Q9Y585 309 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 ENTPD2Q9Y5L3 495 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 MGAQ8IWI9 3026 aa7.81□□□□□ -1.16
VPS50-204ENST00000438395 TSPAN11A1L157 253 aa7.8□□□□□ -1.16
VPS50-204ENST00000438395 GOLGA6CA6NDK9 693 aa7.8□□□□□ -1.16
VPS50-204ENST00000438395 GOLGA6BA6NDN3 693 aa7.8□□□□□ -1.16
VPS50-204ENST00000438395 WASH4PA8MWX3 477 aa7.8□□□□□ -1.16
VPS50-204ENST00000438395 TMCO5BA8MYB1 307 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms