RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CTPS1P17812 591 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 TGM2P21980 687 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 MARCKSL1P49006 195 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 BLKP51451 505 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 NIPAL4Q0D2K0 466 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 ZBTB17Q13105 803 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 DNAJC3Q13217 504 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 NFATC4Q14934 902 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 LLGL1Q15334 1064 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 CNGA3Q16281 694 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 FAXCQ5TGI0 409 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 DENND2CQ68D51 928 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 TMEM139Q8IV31 216 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 PHACTR4Q8IZ21 702 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 ZNF548Q8NEK5 533 aaPredicted RBP15.23■□□□□ 0.03
LIMS3-201ENST00000437679 OR4C6Q8NH72 309 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 KIAA1524Q8TCG1 905 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 KRT35Q92764 455 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 NUS1Q96E22 293 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 MCCC1Q96RQ3 725 aaPredicted RBP15.23■□□□□ 0.03
LIMS3-201ENST00000437679 DUSP23Q9BVJ7 150 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 TDRD1Q9BXT4 1180 aaKnown RBP15.23■□□□□ 0.03
LIMS3-201ENST00000437679 SLC13A1Q9BZW2 595 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 LACRTQ9GZZ8 138 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 NLGN3Q9NZ94 848 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 SPASTQ9UBP0 616 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 KLF15Q9UIH9 416 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 KLK13Q9UKR3 277 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 CHKBQ9Y259 395 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 PPIL1Q9Y3C6 166 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 PCDHGA1Q9Y5H4 931 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 KNTC1P50748 2209 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 hCG_1818297A0A087WSY0 165 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 NPIPB15A6NHN6 443 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PSMD11O00231 422 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 AQP9O43315 295 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PDHA1P08559 390 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 C1SP09871 688 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 CDK4P11802 303 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 CKMT2P17540 419 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 CTNNA1P35221 906 aaKnown RBP15.22■□□□□ 0.03
LIMS3-201ENST00000437679 CD86P42081 329 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 GSDMDP57764 484 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 RPL26P61254 145 aaKnown RBP15.22■□□□□ 0.03
LIMS3-201ENST00000437679 DAB2P98082 770 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PPARDQ03181 441 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 KIF5AQ12840 1032 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PPP2R5EQ16537 467 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 ENPP7Q6UWV6 458 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PLA2G15Q8NCC3 412 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 LMX1AQ8TE12 382 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 TFB1MQ8WVM0 346 aaKnown RBP15.22■□□□□ 0.03
LIMS3-201ENST00000437679 P3H4Q92791 437 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 COQ10AQ96MF6 247 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 CAAP1Q9H8G2 361 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PCDH9Q9HC56 1237 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 EVA1BQ9NVM1 165 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 APOBEC3BQ9UH17 382 aaKnown RBP15.22■□□□□ 0.03
LIMS3-201ENST00000437679 DNPEPQ9ULA0 475 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 RPL26L1Q9UNX3 145 aaKnown RBP15.22■□□□□ 0.03
LIMS3-201ENST00000437679 MSRB2Q9Y3D2 182 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 OR1A2Q9Y585 309 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 PCDHA3Q9Y5H8 950 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 CSNK1G3Q9Y6M4 447 aa15.22■□□□□ 0.03
LIMS3-201ENST00000437679 A0A0J9YYE9 177 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 FAM221BA6H8Z2 402 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 CACNB4O00305 520 aaPredicted RBP15.21■□□□□ 0.03
LIMS3-201ENST00000437679 RFPL3O75679 317 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 TRBC1P01850 177 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 ALPIP09923 528 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 PECAM1P16284 738 aaPredicted RBP15.21■□□□□ 0.03
LIMS3-201ENST00000437679 GM2AP17900 193 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 LHCGRP22888 699 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 HNF1BP35680 557 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 ACADVLP49748 655 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 COPS2P61201 443 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 ILKQ13418 452 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 IHHQ14623 411 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 PROX2Q3B8N5 592 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 PRRT3Q5FWE3 981 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 ESRP1Q6NXG1 681 aaKnown RBP15.21■□□□□ 0.03
LIMS3-201ENST00000437679 TSPAN33Q86UF1 283 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 NT5DC3Q86UY8 548 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 RBFAQ8N0V3 343 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 GALNT15Q8N3T1 639 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 CNTD1Q8N815 330 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 LPCAT1Q8NF37 534 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 DTD2Q96FN9 168 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 TBATAQ96M53 351 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 WDR92Q96MX6 357 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 AGAP3Q96P47 875 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 DESI2Q9BSY9 194 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 CEP41Q9BYV8 373 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 SAE1Q9UBE0 346 aaPredicted RBP15.21■□□□□ 0.03
LIMS3-201ENST00000437679 KLQ9UEF7 1012 aa15.21■□□□□ 0.03
LIMS3-201ENST00000437679 MAP1BP46821 2468 aaKnown RBP15.21■□□□□ 0.02
LIMS3-201ENST00000437679 MACROD2A1Z1Q3 448 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 CCDC66A2RUB6 948 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 GRID2IPA4D2P6 1211 aa15.2■□□□□ 0.02
LIMS3-201ENST00000437679 K7ESM1 405 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms