RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RNF103O00237 685 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 NDC80O14777 642 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 YKT6O15498 198 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 PLRG1O43660 514 aaKnown RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 C1QL1O75973 258 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 KRT14P02533 472 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3HP0C7X1 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 MAT2AP31153 395 aaKnown RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 STIP1P31948 543 aaKnown RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 HNF1BP35680 557 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 ARRB1P49407 418 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 VPS41P49754 854 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 PLK1P53350 603 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 GDF10P55107 478 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 MRPS25P82663 173 aaKnown RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 SEMG2Q02383 582 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 SERINC3Q13530 473 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 SLC12A1Q13621 1099 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 P3H1Q32P28 736 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TMCO4Q5TGY1 634 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 AGBL4Q5VU57 503 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3GQ6DHY5 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3CQ6IPX1 549 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 ARHGEF18Q6ZSZ5 1173 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 B4GALNT4Q76KP1 1039 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TBC1D3Q8IZP1 549 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 OR7D4Q8NG98 312 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 ARHGEF2Q92974 986 aaKnown RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 RTP4Q96DX8 246 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 ALG14Q96F25 216 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 UBL7Q96S82 380 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 SPON2Q9BUD6 331 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 C2orf49Q9BVC5 232 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 TRIM31Q9BZY9 425 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 NOL6Q9H6R4 1146 aaKnown RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 C10orf88Q9H8K7 445 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 PAK5Q9P286 719 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 KLHL8Q9P2G9 620 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-208ENST00000437607 RAI2Q9Y5P3 530 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 ZNF462Q96JM2 2506 aa12.26□□□□□ -0.45
PTPRF-208ENST00000437607 COL6A6A6NMZ7 2263 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 ZSCAN5CA6NGD5 496 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 KCNK1O00180 336 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 CDK4P11802 303 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 CKMT2P17540 419 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 CCNCP24863 283 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 MCM3P25205 808 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 ACVRL1P37023 503 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 PTGIRP43119 386 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 VASPP50552 380 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 CLCN6P51797 869 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 TAS2R38P59533 333 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 IFI35P80217 286 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 SLC7A5Q01650 507 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 GUCY2DQ02846 1103 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 IL10RBQ08334 325 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 CNTN1Q12860 1018 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 ZNF235Q14590 738 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 TRIP13Q15645 432 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 ERCC6LQ2NKX8 1250 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 PROX2Q3B8N5 592 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 ITPRIPL1Q6GPH6 555 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 ARHGAP36Q6ZRI8 547 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 PRPF39Q86UA1 669 aaKnown RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 TRIM69Q86WT6 500 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 BBS5Q8N3I7 341 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 OXR1Q8N573 874 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 LRRN4Q8WUT4 740 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 SPATA13Q96N96 652 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 TSGA13Q96PP4 275 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 VAT1Q99536 393 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 NRSN2Q9GZP1 204 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 DPH5Q9H2P9 285 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 KDM4CQ9H3R0 1056 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 UBA2Q9UBT2 640 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 TPX2Q9ULW0 747 aaKnown RBP12.25□□□□□ -0.45
PTPRF-208ENST00000437607 CA5BQ9Y2D0 317 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 TTLL3Q9Y4R7 772 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 OR51B4Q9Y5P0 310 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 AK5Q9Y6K8 562 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 LRP4O75096 1905 aa12.25□□□□□ -0.45
PTPRF-208ENST00000437607 UQCRHLA0A096LP55 91 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 A0A0D9SEW6 157 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 TRIM38O00635 465 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 MATN3O15232 486 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SLC7A4O43246 635 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 ATP9BO43861 1147 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 MAFKO60675 156 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 PRAMEF11O60813 436 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SDC3O75056 442 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 ZIC2O95409 532 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-208ENST00000437607 UQCRHP07919 91 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 ACP1P24666 158 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 PTPN3P26045 913 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 GEMIN4P57678 1058 aaKnown RBP12.24□□□□□ -0.45
PTPRF-208ENST00000437607 BASP1P80723 227 aaKnown RBP12.24□□□□□ -0.45
PTPRF-208ENST00000437607 INSM1Q01101 510 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-208ENST00000437607 SULT2A1Q06520 285 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 GPS1Q13098 491 aa12.24□□□□□ -0.45
PTPRF-208ENST00000437607 CALCOCO2Q13137 446 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms