RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 MIA3Q5JRA6 1907 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 NLRC5Q86WI3 1866 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 TRPM7Q96QT4 1865 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 PPP6CO00743 305 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 SLC7A4O43246 635 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 PAPSS2O95340 614 aaPredicted RBP11.84□□□□□ -0.51
CD44-209ENST00000433892 TNFAIP8O95379 198 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 C8BP07358 591 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 GRK4P32298 578 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 NDST2P52849 883 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 INHBCP55103 352 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 NME5P56597 212 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 TBX4P57082 545 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 INHBEP58166 350 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 FKBP1BP68106 108 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 RHDQ02161 417 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 NRG1Q02297 640 aaPredicted RBP11.84□□□□□ -0.51
CD44-209ENST00000433892 GALNT1Q10472 559 aaPredicted RBP11.84□□□□□ -0.51
CD44-209ENST00000433892 LSAMPQ13449 338 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 PITRM1Q5JRX3 1037 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 RBM44Q6ZP01 1051 aaKnown RBP11.84□□□□□ -0.51
CD44-209ENST00000433892 LARP4Q71RC2 724 aaKnown RBP eCLIP11.84□□□□□ -0.51
CD44-209ENST00000433892 ZNF683Q8IZ20 524 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 PGBD5Q8N414 524 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 SLC39A13Q96H72 371 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 TBATAQ96M53 351 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 GRIP2Q9C0E4 1043 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 MFSD1Q9H3U5 465 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 COQ10BQ9H8M1 238 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 GMPR2Q9P2T1 348 aaKnown RBP11.84□□□□□ -0.51
CD44-209ENST00000433892 SARDHQ9UL12 918 aa11.84□□□□□ -0.51
CD44-209ENST00000433892 C7orf72A4D263 438 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 LDB2O43679 373 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 NRP2O60462 931 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 B4GALT3O60512 393 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 FAM58BPP0C7Q3 252 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 RHOQP17081 205 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 USP46P62068 366 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 EFEMP1Q12805 493 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 DYNC1I2Q13409 638 aaKnown RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 NADK2Q4G0N4 442 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 MON1AQ86VX9 555 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 CIR1Q86X95 450 aaPredicted RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 AHI1Q8N157 1196 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SLCO4A1Q96BD0 722 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 DGCR14Q96DF8 476 aaKnown RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 C19orf60Q96EN9 201 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SLC25A23Q9BV35 468 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 MRPL40Q9NQ50 206 aaKnown RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 PRDM5Q9NQX1 630 aaPredicted RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 MRGBPQ9NV56 204 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 NDUFA13Q9P0J0 144 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SNX13Q9Y5W8 968 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 PTGDR2Q9Y5Y4 395 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 ARL5AQ9Y689 179 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 TDRD15B5MCY1 1934 aaKnown RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 CCDC160A6NGH7 325 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 LRRC14BA6NHZ5 514 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 VILLO15195 856 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 RTN3O95197 1032 aaPredicted RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 SIX3O95343 332 aaPredicted RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 WISP3O95389 354 aaPredicted RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 ALDOCP09972 364 aaKnown RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 ATXN1LP0C7T5 689 aaKnown RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 SPATA31D3P0C874 917 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 HSPA13P48723 471 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SH3BP2P78314 561 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 LPIN1Q14693 890 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.83□□□□□ -0.52
CD44-209ENST00000433892 UNC50Q53HI1 259 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 ZNF549Q6P9A3 640 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SPATA31D4Q6ZUB0 917 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 AMIGO2Q86SJ2 522 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 MIB1Q86YT6 1006 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 FUNDC1Q8IVP5 155 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 HERC6Q8IVU3 1022 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 ARRDC2Q8TBH0 407 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 BLOC1S5Q8TDH9 187 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 IGSF8Q969P0 613 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 TRMOQ9BU70 441 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 EPB41L1Q9H4G0 881 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 ZNF696Q9H7X3 374 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 POLR3BQ9NW08 1133 aaPredicted RBP11.83□□□□□ -0.52
CD44-209ENST00000433892 TMEM248Q9NWD8 314 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 GMIPQ9P107 970 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 TMEM181Q9P2C4 612 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 GIMAP2Q9UG22 337 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 CD300AQ9UGN4 299 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 CROTQ9UKG9 612 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SCML2Q9UQR0 700 aa11.83□□□□□ -0.52
CD44-209ENST00000433892 SCN10AQ9Y5Y9 1956 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 A0A1B0GTW7 788 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 TNPO2O14787 897 aaKnown RBP11.82□□□□□ -0.52
CD44-209ENST00000433892 KPNA6O60684 536 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 IGHA2P01877 340 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 HMBSP08397 361 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 PIRTP0C851 137 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 SLC2A3P11169 496 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 TYMPP19971 482 aa11.82□□□□□ -0.52
CD44-209ENST00000433892 SLC7A2P52569 658 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms