RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ANKRD6Q9Y2G4 727 aa12.97□□□□□ -0.33
PTCH1-207ENST00000429896 SUPT7LO94864 414 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 HOXB2P14652 356 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 TRIM71Q2Q1W2 868 aaKnown RBP12.96□□□□□ -0.33
PTCH1-207ENST00000429896 TTC9BQ8N6N2 239 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 VPS50Q96JG6 964 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 C1orf74Q96LT6 269 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 GIMAP4Q9NUV9 329 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 ZNF446Q9NWS9 450 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 FAM32AQ9Y421 112 aaKnown RBP12.96□□□□□ -0.33
PTCH1-207ENST00000429896 RFXAPO00287 272 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 ARHGEF9O43307 516 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 RIPK2O43353 540 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 AMD1P17707 334 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 ZNF776Q68DI1 518 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-207ENST00000429896 IYDQ6PHW0 289 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 HORMAD1Q86X24 394 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 ZNF555Q8NEP9 628 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 COPS8Q99627 209 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 GDF3Q9NR23 364 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 KCTD5Q9NXV2 234 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 GDE1Q9NZC3 331 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 CA14Q9ULX7 337 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 LATS1O95835 1130 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 TPBGLP0DKB5 382 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 GNSP15586 552 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 SPAM1P38567 509 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 NCALDP61601 193 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 TMEM248Q9NWD8 314 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 HSFX1Q9UBD0 423 aa12.96□□□□□ -0.33
PTCH1-207ENST00000429896 IL1R2P27930 398 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 VIPR2P41587 438 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 IRAK1P51617 712 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 USP46P62068 366 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 PLOD1Q02809 727 aaPredicted RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 MRPL28Q13084 256 aaKnown RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 ZNF567Q8N184 647 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 SPPL3Q8TCT6 385 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 NMUR1Q9HB89 426 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 R3HDM2Q9Y2K5 976 aaKnown RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 C5orf60A6NFR6 353 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 FPGTO14772 594 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 PITRM1Q5JRX3 1037 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 LRRC8BQ6P9F7 803 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 KIAA2013Q8IYS2 634 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 PCDH20Q8N6Y1 951 aaKnown RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 EXOSC4Q9NPD3 245 aaKnown RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 MARCH5Q9NX47 278 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 H2AFY2Q9P0M6 372 aaPredicted RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 CXXC1Q9P0U4 656 aaPredicted RBP12.96□□□□□ -0.34
PTCH1-207ENST00000429896 DNAJC16Q9Y2G8 782 aa12.96□□□□□ -0.34
PTCH1-207ENST00000429896 A0A087X1B8 175 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 KANSL1LA0AUZ9 987 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 ARSIQ5FYB1 569 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 FAM45BPQ6NSW5 357 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CRTC3Q6UUV7 619 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 KDM7AQ6ZMT4 941 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 PRR23BQ6ZRT6 265 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 MMAAQ8IVH4 418 aaKnown RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 FAM45AQ8TCE6 357 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 ZNF398Q8TD17 642 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 FBXO6Q9NRD1 293 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 GCATO75600 419 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CHN1P15882 459 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 C1orf53Q5VUE5 145 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 DTLQ9NZJ0 730 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 HCFC2Q9Y5Z7 792 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 H3BNC9 293 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 KDELR3O43731 214 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 SASH3O75995 380 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 TPSB2P20231 275 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 TGM3Q08188 693 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 TPSAB1Q15661 275 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CRY1Q16526 586 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 GALNTL6Q49A17 601 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 GDPD4Q6W3E5 623 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 PLD3Q8IV08 490 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 RBFAQ8N0V3 343 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 AP2M1Q96CW1 435 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CERS2Q96G23 380 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 SEMA4AQ9H3S1 761 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CNTN6Q9UQ52 1028 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 TMEM120BA0PK00 339 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CD3EAPO15446 510 aaKnown RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 RPP40O75818 363 aaKnown RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CATP04040 527 aaKnown RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CEBPBP17676 345 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 IL2P60568 153 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 RUNX3Q13761 415 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CHI3L2Q15782 390 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CNGA3Q16281 694 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 SLC22A9Q8IVM8 553 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 TMEM174Q8WUU8 243 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 GLMNQ92990 594 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 CCNT2O60583 730 aaKnown RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 SKAP2O75563 359 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-207ENST00000429896 SEC24AO95486 1093 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 HSPA14Q0VDF9 509 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 STXBP5Q5T5C0 1151 aa12.95□□□□□ -0.34
PTCH1-207ENST00000429896 NCBP2-AS2Q69YL0 99 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms