RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ARCN1P48444 511 aaKnown RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 CD151P48509 253 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 APLP1P51693 650 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 COPAP53621 1224 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 RAB10P61026 200 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 SLC34A1Q06495 639 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 GK3PQ14409 553 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 CAPRIN1Q14444 709 aaKnown RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 RNF219Q5W0B1 726 aaPredicted RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 TRAF7Q6Q0C0 670 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 RNF111Q6ZNA4 994 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 CAMK1DQ8IU85 385 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 DCP1BQ8IZD4 617 aaKnown RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 LSMEM2Q8N112 164 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 SCML4Q8N228 414 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 SKA2Q8WVK7 121 aaPredicted RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 PTERQ96BW5 349 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 MTFMTQ96DP5 389 aaKnown RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 C3orf30Q96M34 536 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 SERPINB11Q96P15 392 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 ILKAPQ9H0C8 392 aaPredicted RBP8.4□□□□□ -1.07
CD44-208ENST00000428726 SMOC2Q9H3U7 446 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 HIPK3Q9H422 1215 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.4□□□□□ -1.07
CD44-208ENST00000428726 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.4□□□□□ -1.07
CD44-208ENST00000428726 SCOCQ9UIL1 159 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 CDH22Q9UJ99 828 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 ASB1Q9Y576 335 aa8.4□□□□□ -1.07
CD44-208ENST00000428726 TRPM7Q96QT4 1865 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 MAGEB16A2A368 324 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 A6NHS1 94 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 CAPN14A8MX76 684 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 H0Y626 953 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 H3BMM5 538 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 AP3B1O00203 1094 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 CDC7O00311 574 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 SMAD6O43541 496 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 LUC7L3O95232 432 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 MMP2P08253 660 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 GFAPP14136 432 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 PAX3P23760 479 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 RAB27AP51159 221 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 LBRQ14739 615 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 TRIM60Q495X7 471 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 DET1Q7L5Y6 550 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 PIANPQ8IYJ0 282 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 NMD3Q96D46 503 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 EBF3Q9H4W6 596 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 CD84Q9UIB8 345 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 FKBPLQ9UIM3 349 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 AAR2Q9Y312 384 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 SLC4A7Q9Y6M7 1214 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 A0A088AWK7 358 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 CIB2O75838 187 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 LMNAP02545 664 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 MBL2P11226 248 aaPredicted RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 ATP6V1B1P15313 513 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 XRCC1P18887 633 aaPredicted RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 TACR2P21452 398 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 ITGB8P26012 769 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 PEX2P28328 305 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 DPP6P42658 865 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 GDF5P43026 501 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 NPY2RP49146 381 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 VEGFBP49765 207 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 STK19P49842 368 aaPredicted RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 KLF10Q13118 480 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 FAM83EQ2M2I3 478 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 MMEL1Q495T6 779 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 HECTD2Q5U5R9 776 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 SEL1L3Q68CR1 1132 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 PAQR3Q6TCH7 311 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 RANBP10Q6VN20 620 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 TMEM151AQ8N4L1 468 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 SIDT2Q8NBJ9 832 aaKnown RBP8.39□□□□□ -1.07
CD44-208ENST00000428726 SORCS1Q8WY21 1168 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 CASD1Q96PB1 797 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 GBP5Q96PP8 586 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 GCNAQ96QF7 691 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 VN1R3Q9BXE9 311 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 CDH19Q9H159 772 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 RHOJQ9H4E5 214 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 OCEL1Q9H607 264 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 HCFC1R1Q9NWW0 138 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 EGFL7Q9UHF1 273 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 PCDHB8Q9UN66 801 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 SCN10AQ9Y5Y9 1956 aa8.39□□□□□ -1.07
CD44-208ENST00000428726 SLC38A8A6NNN8 435 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 F5H5T6 163 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 UBFD1O14562 309 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 ZNF195O14628 629 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 PSMD3O43242 534 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ANXA9O76027 345 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 PEX11BO96011 259 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 CYP11A1P05108 521 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 CKMP06732 381 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SKIP12755 728 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 COX4I1P13073 169 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ITGAXP20702 1163 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 CCNCP24863 283 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms