RNA–Protein interactions for RNA: ENST00000428445.1

VARS-216, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 863 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-216ENST00000428445 BRAT1Q6PJG6 821 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 SPRED1Q7Z699 444 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 ARHGAP12Q8IWW6 846 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 MCOLN2Q8IZK6 566 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 NPWQ8N729 165 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 TMEM74Q96NL1 305 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 KCTD15Q96SI1 283 aaPredicted RBP16.61■□□□□ 0.25
VARS-216ENST00000428445 TRIM7Q9C029 511 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 SPATS2LQ9NUQ6 558 aaKnown RBP16.61■□□□□ 0.25
VARS-216ENST00000428445 DONSONQ9NYP3 566 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 AP4E1Q9UPM8 1137 aa16.61■□□□□ 0.25
VARS-216ENST00000428445 A0A0U1RQS6 177 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 C9orf172C9J069 976 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 CACNB4O00305 520 aaPredicted RBP16.6■□□□□ 0.25
VARS-216ENST00000428445 EEF2KO00418 725 aaKnown RBP16.6■□□□□ 0.25
VARS-216ENST00000428445 FGF10O15520 208 aaPredicted RBP16.6■□□□□ 0.25
VARS-216ENST00000428445 ELFN1P0C7U0 828 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 FAM87AP0C7U9 286 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 SCNN1BP51168 640 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 AIF1P55008 147 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 OR1D5P58170 312 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 B4GALNT1Q00973 533 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 EIF3IQ13347 325 aaKnown RBP16.6■□□□□ 0.25
VARS-216ENST00000428445 ARHGEF7Q14155 803 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 HLTFQ14527 1009 aaKnown RBP eCLIP16.6■□□□□ 0.25
VARS-216ENST00000428445 GRM3Q14832 879 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 C16orf72Q14CZ0 275 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 ACOX1Q15067 660 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 AMZ1Q400G9 498 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 C14orf28Q4W4Y0 310 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 PHF19Q5T6S3 580 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 DENND2CQ68D51 928 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 CLEC17AQ6ZS10 378 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 PAF1Q8N7H5 531 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 SGF29Q96ES7 293 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 TUBGCP5Q96RT8 1024 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 CINPQ9BW66 212 aaPredicted RBP16.6■□□□□ 0.25
VARS-216ENST00000428445 CLMPQ9H6B4 373 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 ATP13A3Q9H7F0 1226 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 APPL1Q9UKG1 709 aa16.6■□□□□ 0.25
VARS-216ENST00000428445 ANKRD62A6NC57 917 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 ARHGAP42A6NI28 874 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 LRRC10BA6NIK2 292 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 TMX2-CTNND1H3BSU7 103 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 TRAFD1O14545 582 aaPredicted RBP16.59■□□□□ 0.25
VARS-216ENST00000428445 NVLO15381 856 aaKnown RBP16.59■□□□□ 0.25
VARS-216ENST00000428445 CCL4P13236 92 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 ERCC2P18074 760 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 PSMA2P25787 234 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 SERPINA4P29622 427 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 TRIM23P36406 574 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 KIAA1024LP59773 190 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 UBXN1Q04323 297 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 BCL2L1Q07817 233 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 AFMIDQ63HM1 303 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 PNCKQ6P2M8 343 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 ZNF574Q6ZN55 896 aaPredicted RBP16.59■□□□□ 0.25
VARS-216ENST00000428445 NRROSQ86YC3 692 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 SLITRK4Q8IW52 837 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 RCBTB1Q8NDN9 531 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 OR6C4Q8NGE1 309 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 ATL2Q8NHH9 583 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 PATE1Q8WXA2 126 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 PMEPA1Q969W9 287 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 ECHDC3Q96DC8 303 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 SNRNP25Q9BV90 132 aaKnown RBP16.59■□□□□ 0.25
VARS-216ENST00000428445 PCDHGC4Q9Y5F7 938 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 ST14Q9Y5Y6 855 aa16.59■□□□□ 0.25
VARS-216ENST00000428445 PRSS38A1L453 326 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 DAPK3O43293 454 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 WISP1O95388 367 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 FGF1P05230 155 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 LIPCP11150 499 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 AK4P27144 223 aaPredicted RBP16.58■□□□□ 0.24
VARS-216ENST00000428445 ALDH4A1P30038 563 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 CSNK1DP48730 415 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 POLD2P49005 469 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 SLC10A7Q0GE19 358 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 MAMLD1Q13495 774 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 PPP6R3Q5H9R7 873 aaPredicted RBP16.58■□□□□ 0.24
VARS-216ENST00000428445 MANEAQ5SRI9 462 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 ERMARDQ5T6L9 678 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 CYP4V2Q6ZWL3 525 aaPredicted RBP16.58■□□□□ 0.24
VARS-216ENST00000428445 DPPA4Q7L190 304 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 ANKRD20A12PQ8NF67 263 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 HTR3CQ8WXA8 447 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 NUDT22Q9BRQ3 303 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 ARHGAP9Q9BRR9 750 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 FAM117AQ9C073 453 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 CARS2Q9HA77 564 aaKnown RBP16.58■□□□□ 0.24
VARS-216ENST00000428445 SP110Q9HB58 689 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 LMBRD1Q9NUN5 540 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 B4GALT6Q9UBX8 382 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 LIMA1Q9UHB6 759 aaKnown RBP16.58■□□□□ 0.24
VARS-216ENST00000428445 ACSL6Q9UKU0 697 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 PLEKHM1Q9Y4G2 1056 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 SDK2Q58EX2 2172 aa16.58■□□□□ 0.24
VARS-216ENST00000428445 LGALS16A8MUM7 142 aa16.57■□□□□ 0.24
VARS-216ENST00000428445 CCDC172P0C7W6 258 aa16.57■□□□□ 0.24
VARS-216ENST00000428445 DESP17661 470 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms