RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 SLC47A1Q96FL8 570 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 INPP4AQ96PE3 977 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 FAM118BQ9BPY3 351 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TUBA1CQ9BQE3 449 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SHCBP1LQ9BZQ2 653 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SENP2Q9HC62 589 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 BLOC1S4Q9NUP1 217 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TMEM9Q9P0T7 183 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ADGRE2Q9UHX3 823 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SAMHD1Q9Y3Z3 626 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TLL2Q9Y6L7 1015 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SPATA31A5Q5VU36 1347 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SPATA31A7Q8IWB4 1347 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TRAV19A0A0A6YYK7 116 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 OR14I1A6ND48 311 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ORC5O43913 435 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MAFO75444 373 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 LYPLA1O75608 230 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SLC25A12O75746 678 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TFRCP02786 760 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ATF6P18850 670 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 AMPD1P23109 780 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SSTR3P32745 418 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 RPA3P35244 121 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ALDH9A1P49189 494 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 IL18R1Q13478 541 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 LPIN1Q14693 890 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MYBPC3Q14896 1274 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ZMYND11Q15326 602 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SWI5Q1ZZU3 235 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 AP5B1Q2VPB7 878 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 EPC2Q52LR7 807 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TTMPQ5BVD1 217 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MEIOBQ8N635 442 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 AVL9Q8NBF6 648 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SLC4A11Q8NBS3 891 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SUSD6Q92537 303 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 BAP1Q92560 729 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MFSD14AQ96MC6 490 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 DCUN1D5Q9BTE7 237 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 RAB11FIP5Q9BXF6 653 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SLC4A5Q9BY07 1137 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CCDC177Q9NQR7 707 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 GPATCH2LQ9NWQ4 482 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MARCH2Q9P0N8 246 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SUCOQ9UBS9 1254 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SEC14L4Q9UDX3 406 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 FBXO5Q9UKT4 447 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 PNMA8BQ9ULN7 279 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 AQP12BA6NM10 295 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 G3V2T6 193 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 KLHL18O94889 574 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 S100A6P06703 90 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CXCL8P10145 99 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 NR2F1P10589 423 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ALDH4A1P30038 563 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 RBM34P42696 430 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 BNIP1Q12981 228 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 NDUFA9Q16795 377 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ZSWIM7Q19AV6 140 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ATP13A5Q4VNC0 1218 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TAPT1Q6NXT6 567 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 VSTM1Q6UX27 236 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 LRRC55Q6ZSA7 311 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TTC7BQ86TV6 843 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 AQP12AQ8IXF9 295 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 COLGALT2Q8IYK4 626 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 LGI2Q8N0V4 545 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 IQCKQ8N0W5 287 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CPSF7Q8N684 471 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ZSWIM2Q8NEG5 633 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 OR2T12Q8NG77 320 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MYO19Q96H55 970 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 FDXACB1Q9BRP7 624 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SMPD3Q9NY59 655 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 KLQ9UEF7 1012 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MCM8Q9UJA3 840 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 PCDHGB6Q9Y5F9 930 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 UBIAD1Q9Y5Z9 338 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 DUSP10Q9Y6W6 482 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CLDN25C9JDP6 229 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 PTGES3LE9PB15 166 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 RFXANKO14593 260 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 KHDRBS3O75525 346 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CBX6O95503 412 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CCNB1P14635 433 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TFEBP19484 476 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CYP2B6P20813 491 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MNDAP41218 407 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CRATP43155 626 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 GNPDA1P46926 289 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CLCN3P51790 818 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MFSD10Q14728 455 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 NOMO1Q15155 1222 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SLC5A9Q2M3M2 681 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ZACNQ401N2 412 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 EIPR1Q53HC9 387 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 RBM48Q5RL73 367 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CWF19L1Q69YN2 538 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms