RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 AAR2Q9Y312 384 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 MYBPHLA2RUH7 354 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 TRIM38O00635 465 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CABYRO75952 493 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 MYO1DO94832 1006 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CPB1P15086 417 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 IL12RB1P42701 662 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CEACAM7Q14002 265 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 DPYSL2Q16555 572 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 KYAT1Q16773 422 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 TEX44Q53QW1 395 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CNSTQ6PJW8 725 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 PRR23BQ6ZRT6 265 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 HEXDCQ8WVB3 486 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 RPRD1AQ96P16 312 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 DHRS4Q9BTZ2 278 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 MRPS26Q9BYN8 205 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 HMG20AQ9NP66 347 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 RGS18Q9NS28 235 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 ATP6V1HQ9UI12 483 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 THSD7AQ9UPZ6 1657 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 NDUFS3O75489 264 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CELF2O95319 508 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 PRKACAP17612 351 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 FASP25445 335 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CDH5P33151 784 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 KRT20P35900 424 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 EFEMP1Q12805 493 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 ADGRE1Q14246 886 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 FAM219BQ5XKK7 198 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 SPATA2LQ8IUW3 424 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 PTGR2Q8N8N7 351 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 SLC35F5Q8WV83 523 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 HDAC10Q969S8 669 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 FAM193BQ96PV7 902 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 APOL5Q9BWW9 433 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 C6orf62Q9GZU0 229 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 NDFIP2Q9NV92 336 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 KLHL20Q9Y2M5 609 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 COPG1Q9Y678 874 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 ARPC4-TTLL3A0A0A6YYG9 625 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 A8MU76 341 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TOR1BO14657 336 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 NRP1O14786 923 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 MTSS1O43312 755 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 AHSGP02765 367 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 JUNP05412 331 aaKnown RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 CD1EP15812 388 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 CD86P42081 329 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TARBP2Q15633 366 aaKnown RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 DCAF4L1Q3SXM0 396 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 GPR158Q5T848 1215 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 PLPPR4Q7Z2D5 763 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 CANT1Q8WVQ1 401 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 SEPT8Q92599 483 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 CNTN3Q9P232 1028 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 NDUFAF1Q9Y375 327 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 PCNTO95613 3336 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 MYO1GB0I1T2 1018 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 SH3BP5O60239 455 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 DLX3O60479 287 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 BEST1O76090 585 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 SIX3O95343 332 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 HGFP14210 728 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 HSPA13P48723 471 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 NPY2RP49146 381 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 CUZD1Q86UP6 607 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 ZDHHC17Q8IUH5 632 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 FAM9CQ8IZT9 166 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TMIGD2Q96BF3 282 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 RHOJQ9H4E5 214 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 EXOSC4Q9NPD3 245 aaKnown RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 EMCNQ9ULC0 261 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 A0A087WXM4 84 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 HMX2A2RU54 273 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 SLCO1B7G3V0H7 640 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TMCC2O75069 709 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 AP2A1O95782 977 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 ADSLP30566 484 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 BNIP3Q12983 259 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 RALGPS2Q86X27 583 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TNIP2Q8NFZ5 429 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 SLC45A3Q96JT2 553 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 HSFY1Q96LI6 401 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 ABCG8Q9H221 673 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 SPAG4Q9NPE6 437 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 RNF112Q9ULX5 631 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 N6AMT1Q9Y5N5 214 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TFECO14948 347 aaPredicted RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 RNASEH2AO75792 299 aaKnown RBP11.97□□□□□ -0.49
HMGB1-206ENST00000405805 C22orf31O95567 290 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 UGT1A1P22309 533 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 UGT1A4P22310 534 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 UGT1A3P35503 534 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 UGT1A5P35504 534 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 GTF2H3Q13889 308 aa11.97□□□□□ -0.49
HMGB1-206ENST00000405805 TAF1CQ15572 869 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms